C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRA stem-loop interacting RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557342 SLIRP-001 ENSG00000119705 9606 + 14:77708071-77717598 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000557342
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000557342 44.412±0.00 59.263±15.99 28.994±2.79 45.247±3.87 39.222±3.56 47.805±11.55 33.143±0.20 35.404±1.77 52.664±12.65 64.136±9.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104
CIL_0004U2 CIL_0004U2_0001 CGP 14:77708071-77761207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000961 IEA negative regulation of mitochondrial RNA catabolic process
GO:0001669 IEA acrosomal vesicle
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IEA spermatid development
GO:0007338 IEA single fertilization
GO:0030317 IEA sperm motility
GO:0030529 IEA ribonucleoprotein complex
GO:0036126 IEA sperm flagellum
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:0070584 IEA mitochondrion morphogenesis

Homologs

No Homologs available.

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