C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRA stem-loop interacting RNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021040 Slirp 10090 + 12:87443896-87452206 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077462 Slirp-005 87443936-87449904 protein_coding
  ENSMUST00000160488 Slirp-003 87443912-87449920 protein_coding
  ENSMUST00000160880 Slirp-004 87443946-87449924 protein_coding
  ENSMUST00000161023 Slirp-001 87443896-87452206 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077462ENSMUST00000160488
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.383±0.00 N/A N/A N/A
ENSMUST00000160488 17.451±0.40 8.935±1.29 52.183±9.06 30.231±0.00 18.160±4.52 10.035±1.46 20.903±1.71 25.671±2.62 27.157±18.93 11.384±0.73 23.558±3.78 13.182±1.99 42.686±0.00 29.039±2.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TW CIL_0004TW_0002 CGP 12:87305058-87444017
CIL_0004TV CIL_0004TV_0002 CGP 12:87425840-87452206
CIL_0004U2 CIL_0004U2_0002 CGP 12:87443896-87472299

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000961 IGI negative regulation of mitochondrial RNA catabolic process
GO:0001669 IDA acrosomal vesicle
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0007338 IMP single fertilization
GO:0030317 IMP sperm motility
GO:0030529 IDA ribonucleoprotein complex
GO:0036126 IDA sperm flagellum
GO:0044822 IEA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070584 IMP mitochondrion morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000097753 SLIRP SRA stem-loop interacting RNA binding protein protein_coding Danio_rerio
ENSG00000119705 SLIRP SRA stem-loop interacting RNA binding protein protein_coding Homo_sapiens

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