C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: atlastin GTPase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119787 ATL2 9606 - 2:38294880-38377285 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000378954 ATL2-002 38294880-38377262 protein_coding
  ENST00000402054 ATL2-005 38295609-38376224 protein_coding
  ENST00000405384 ATL2-003 38295609-38377273 nonsense_mediated_decay
  ENST00000406122 ATL2-013 38295154-38377285 protein_coding
  ENST00000416222 ATL2-006 38343297-38377273 nonsense_mediated_decay
  ENST00000419554 ATL2-001 38295901-38377273 protein_coding
  ENST00000443098 ATL2-016 38309431-38377256 protein_coding
  ENST00000449130 ATL2-012 38309378-38377261 protein_coding
  ENST00000451483 ATL2-007 38318937-38377279 protein_coding
  ENST00000452935 ATL2-004 38295908-38376594 protein_coding
  ENST00000456736 ATL2-011 38314609-38377262 nonsense_mediated_decay
  ENST00000472097 ATL2-009 38318835-38377273 retained_intron
  ENST00000474535 ATL2-010 38318326-38343415 retained_intron
  ENST00000477642 ATL2-014 38297931-38300318 retained_intron
  ENST00000486927 ATL2-008 38343294-38359604 processed_transcript
  ENST00000489896 ATL2-015 38298218-38300433 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378954ENST00000405384ENST00000419554ENST00000452935ENST00000472097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378954 3.565±0.00 3.547±0.00 4.094±0.00 3.481±1.33 7.583±2.06 8.419±3.42 3.653±1.55 6.573±1.84 8.606±3.80 4.495±2.04 5.725±0.50 12.717±5.51 3.903±0.30 9.171±0.00
ENST00000405384 2.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419554 N/A N/A N/A N/A 2.148±0.00 N/A N/A 3.165±0.00 3.565±0.00 4.454±0.00 N/A 7.487±0.00 1.198±0.00 3.844±0.00
ENST00000452935 N/A N/A N/A N/A 2.745±0.00 3.276±0.00 2.021±0.00 N/A N/A 3.513±0.00 N/A N/A N/A N/A
ENST00000472097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.399±0.00 9.745±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IO CIL_0002IO_0001 CGP 2:38066973-38377285
CIL_0002IR CIL_0002IR_0001 CGP 2:38294880-38603586

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 NAS:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005783 IDA endoplasmic reticulum
GO:0006184 IEA GTP catabolic process
GO:0007029 IMP endoplasmic reticulum organization
GO:0007030 IMP Golgi organization
GO:0016020 IDA membrane
GO:0016021 IDA integral component of membrane
GO:0042802 IDA identical protein binding
GO:0051260 IDA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057719 atl2 atlastin GTPase 2 protein_coding Danio_rerio
ENSMUSG00000059811 Atl2 atlastin GTPase 2 protein_coding Mus_musculus

Loading