C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002IO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138061-ENSG00000119787 CGP 9606 2:38066973-38377285
GeneTranscriptPositionBiotype
ENSG00000115841 (RMDN2)
regulator of microtubule dynamics 2 		ENST00000234195 (RMDN2-001) 37950463-38067137 protein_coding
ENST00000354545 (RMDN2-002) 37925319-38017264 protein_coding
ENST00000402091 (RMDN2-006) 37950501-37953110 protein_coding
ENST00000406384 (RMDN2-004) 37928759-38017744 protein_coding
ENST00000407257 (RMDN2-005) 37950432-38017558 protein_coding
ENST00000414644 (RMDN2-011) 37923187-37974114 protein_coding
ENST00000417700 (RMDN2-201) 37950453-38017741 protein_coding
ENST00000425641 (RMDN2-010) 37989547-38017727 protein_coding
ENST00000440353 (RMDN2-003) 37925347-37998363 nonsense_mediated_decay
ENST00000442857 (RMDN2-013) 37950464-38004187 protein_coding
ENST00000469469 (RMDN2-008) 38002868-38067142 processed_transcript
ENST00000496735 (RMDN2-015) 37974691-37989610 retained_intron
ENSG00000119787 (ATL2)
atlastin GTPase 2 		ENST00000378954 (ATL2-002) 38294880-38377262 protein_coding
ENST00000402054 (ATL2-005) 38295609-38376224 protein_coding
ENST00000405384 (ATL2-003) 38295609-38377273 nonsense_mediated_decay
ENST00000406122 (ATL2-013) 38295154-38377285 protein_coding
ENST00000416222 (ATL2-006) 38343297-38377273 nonsense_mediated_decay
ENST00000419554 (ATL2-001) 38295901-38377273 protein_coding
ENST00000443098 (ATL2-016) 38309431-38377256 protein_coding
ENST00000449130 (ATL2-012) 38309378-38377261 protein_coding
ENST00000451483 (ATL2-007) 38318937-38377279 protein_coding
ENST00000452935 (ATL2-004) 38295908-38376594 protein_coding
ENST00000456736 (ATL2-011) 38314609-38377262 nonsense_mediated_decay
ENST00000472097 (ATL2-009) 38318835-38377273 retained_intron
ENST00000474535 (ATL2-010) 38318326-38343415 retained_intron
ENST00000477642 (ATL2-014) 38297931-38300318 retained_intron
ENST00000486927 (ATL2-008) 38343294-38359604 processed_transcript
ENST00000489896 (ATL2-015) 38298218-38300433 retained_intron
ENSG00000199603 (RNU6-951P)
RNA, U6 small nuclear 951, pseudogene 		ENST00000362733 (RNU6-951P-201) 38147415-38147521 snRNA
ENSG00000213594 (GAPDHP25)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 25 		ENST00000447061 (GAPDHP25-001) 38285410-38286410 processed_pseudogene
ENSG00000227292 (AC009229.5)
 ENST00000450854 (AC009229.5-001) 38203363-38239590 lincRNA
ENSG00000227770 (RPL7P12)
ribosomal protein L7 pseudogene 12 		ENST00000446719 (RPL7P12-001) 38231568-38232317 processed_pseudogene
ENSG00000229160 (AC009229.6)
 ENST00000417213 (AC009229.6-001) 38132637-38138946 lincRNA
ENSG00000273006 (RP11-314C9.2)
 ENST00000608056 (RP11-314C9.2-001) 38193348-38193629 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002IO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024087-ENSMUSG00000059811 CGP 10090 17:79706953-79896123
GeneTranscriptPositionBiotype
ENSMUSG00000024087 (Cyp1b1)
cytochrome P450, family 1, subfamily b, polypeptide 1 		ENSMUST00000024894 (Cyp1b1-201) 79706953-79715041 protein_coding
ENSMUSG00000059811 (Atl2)
atlastin GTPase 2 		ENSMUST00000068282 (Atl2-201) 79848392-79896028 protein_coding
ENSMUST00000112437 (Atl2-202) 79848392-79896123 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IO_0001ENSG00000115841ENST00000234195ENST00000354545ENST00000406384ENST00000417700ENSG00000119787ENST00000378954ENST00000405384ENST00000419554ENST00000452935ENST00000472097ENSG00000199603ENST00000362733ENSG00000213594ENST00000447061ENSG00000227292ENST00000450854ENSG00000227770ENST00000446719ENSG00000229160ENST00000417213ENSG00000273006ENST00000608056CIL_0002IO_0002ENSMUSG00000024087ENSMUST00000024894ENSMUSG00000059811ENSMUST00000068282
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115841 ENST00000234195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.632±0.00
ENST00000354545 N/A N/A 1.764±0.00 3.750±0.00 N/A N/A N/A N/A 3.054±0.00 N/A N/A 2.285±1.10 1.001±0.06 N/A
ENST00000402091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.267±0.74 0.773±0.00 N/A
ENST00000407257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417700 N/A N/A N/A N/A N/A 2.538±0.00 N/A N/A 1.803±0.00 N/A N/A N/A N/A N/A
ENST00000425641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000119787 ENST00000378954 3.565±0.00 3.547±0.00 4.094±0.00 3.481±1.33 7.583±2.06 8.419±3.42 3.653±1.55 6.573±1.84 8.606±3.80 4.495±2.04 5.725±0.50 12.717±5.51 3.903±0.30 9.171±0.00
ENST00000402054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000405384 2.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419554 N/A N/A N/A N/A 2.148±0.00 N/A N/A 3.165±0.00 3.565±0.00 4.454±0.00 N/A 7.487±0.00 1.198±0.00 3.844±0.00
ENST00000443098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452935 N/A N/A N/A N/A 2.745±0.00 3.276±0.00 2.021±0.00 N/A N/A 3.513±0.00 N/A N/A N/A N/A
ENST00000456736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.399±0.00 9.745±0.00
ENST00000474535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199603 ENST00000362733 N/A N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213594 ENST00000447061 0.016±0.00 N/A N/A 0.037±0.00 0.017±0.00 N/A 0.029±0.00 0.050±0.00 N/A N/A 0.221±0.00 N/A N/A 0.030±0.00
ENSG00000227292 ENST00000450854 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A 0.107±0.00
ENSG00000227770 ENST00000446719 0.174±0.00 0.148±0.00 N/A 0.097±0.00 0.128±0.00 N/A N/A N/A N/A 0.092±0.00 0.014±0.00 0.057±0.00 N/A N/A
ENSG00000229160 ENST00000417213 0.143±0.00 0.819±0.00 N/A 1.215±0.00 0.844±0.00 0.048±0.00 0.525±0.00 1.367±0.00 0.328±0.00 0.479±0.38 1.185±0.00 N/A N/A 0.792±0.00
ENSG00000273006 ENST00000608056 N/A N/A N/A N/A 0.101±0.00 N/A N/A 0.401±0.00 N/A N/A N/A N/A N/A 0.102±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024087 ENSMUST00000024894 2.109±0.98 19.666±1.77 9.634±1.18 1.475±1.01 13.028±5.38 0.253±0.12 1.510±0.41 9.661±3.19 0.119±0.05 4.248±0.56 0.141±0.20 70.761±24.49 0.293±0.41 2.312±0.29
ENSMUSG00000059811 ENSMUST00000068282 13.722±2.31 23.065±3.49 9.586±0.32 5.516±1.85 11.906±1.65 14.378±4.34 9.779±0.87 12.520±0.74 18.550±6.72 7.261±2.32 47.987±10.23 12.745±4.66 11.094±4.09 11.656±3.62
ENSMUST00000112437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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