C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120328 PCDHB12 9606 + 5:141208697-141212571 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000239450 PCDHB12-001 141208719-141212571 protein_coding
  ENST00000622978 PCDHB12-003 141208719-141211559 protein_coding
  ENST00000624949 PCDHB12-002 141208697-141211537 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000239450ENST00000622978ENST00000624949
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000239450 0.506±0.00 0.520±0.00 0.109±0.00 0.395±0.00 0.382±0.01 0.196±0.09 0.129±0.08 0.348±0.00 0.091±0.08 0.618±0.26 N/A 0.852±0.00 0.069±0.01 0.606±0.03
ENST00000622978 0.397±0.00 N/A N/A N/A 0.170±0.00 0.158±0.00 N/A N/A N/A N/A N/A N/A 0.162±0.00 0.595±0.00
ENST00000624949 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A 0.137±0.01 0.269±0.00 0.317±0.06 0.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000F CGP 5:141199582-141212571
CIL_00062S CIL_00062S_000B CGP 5:141208697-141218979

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000043313 Pcdhb19 protocadherin beta 19 protein_coding Mus_musculus

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