C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000624949 PCDHB12-002 ENSG00000120328 9606 + 5:141208697-141211537 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleOvaryPlacentaTestisENST00000624949
Transcript ID Liver Muscle Ovary Placenta Testis
ENST00000624949 0.027±0.00 0.137±0.01 0.269±0.00 0.317±0.06 0.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000F CGP 5:141199582-141212571
CIL_00062S CIL_00062S_000B CGP 5:141208697-141218979

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 941
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 905
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 889
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 872
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 870
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 821
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 819

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