C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239450 PCDHB12-001 ENSG00000120328 9606 + 5:141208719-141212571 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000239450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000239450 0.506±0.00 0.520±0.00 0.109±0.00 0.395±0.00 0.382±0.01 0.196±0.09 0.129±0.08 0.348±0.00 0.091±0.08 0.618±0.26 0.852±0.00 0.069±0.01 0.606±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000F CGP 5:141199582-141212571
CIL_00062S CIL_00062S_000B CGP 5:141208697-141218979

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 946
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 920
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 905
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 889
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 872
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 856
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 828

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