C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: exosome component 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120699 EXOSC8 9606 + 13:36998816-37009613 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000239893 EXOSC8-008 37000783-37008833 nonsense_mediated_decay
  ENST00000389704 EXOSC8-003 37000541-37009401 protein_coding
  ENST00000464235 EXOSC8-012 37002268-37008138 processed_transcript
  ENST00000470423 EXOSC8-006 37002273-37004525 processed_transcript
  ENST00000474661 EXOSC8-005 37000786-37008785 processed_transcript
  ENST00000481013 EXOSC8-001 37006978-37009613 protein_coding
  ENST00000488108 EXOSC8-010 37001474-37003001 processed_transcript
  ENST00000488779 EXOSC8-011 37002268-37008177 processed_transcript
  ENST00000489088 EXOSC8-004 36998816-37006153 processed_transcript
  ENST00000490537 EXOSC8-002 37000787-37009401 retained_intron
  ENST00000495092 EXOSC8-009 37004218-37008832 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389704ENST00000490537
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389704 11.252±0.00 13.758±0.00 5.018±0.00 6.434±1.43 7.370±0.68 4.635±2.85 6.364±4.21 8.716±0.00 7.465±0.00 6.073±3.69 17.423±4.70 14.950±3.82 33.860±0.00
ENST00000490537 N/A 4.956±0.00 N/A 2.804±0.00 N/A N/A N/A N/A N/A N/A 5.365±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PF CIL_0000PF_0002 CGP 13:36844831-37000261
CIL_0000PE CIL_0000PE_0002 CGP 13:36949775-37009613
CIL_0006CQ CIL_0006CQ_0002 CGP 13:36998816-37059713

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000178 IDA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017091 IDA AU-rich element binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068755 exosc8 exosome component 8 protein_coding Danio_rerio
ENSMUSG00000027752 Exosc8 exosome component 8 protein_coding Mus_musculus

Loading