C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000PF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000021938-ENSDARG00000061235 CGP 7955 10:35985042-36026169
GeneTranscriptPositionBiotype
ENSDARG00000021938 (smad9)
MAD homolog 9 (Drosophila) 		ENSDART00000028618 (smad9-201) 35985042-36004154 protein_coding
ENSDART00000132823 (smad9-001) 35985042-36004657 protein_coding
ENSDART00000138281 (smad9-003) 35989202-35993341 retained_intron
ENSDART00000145509 (smad9-002) 35989411-36000161 processed_transcript
ENSDARG00000061235 (alg5)
asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase) 		ENSDART00000087114 (alg5-201) 36008066-36025996 protein_coding
ENSDART00000131279 (alg5-001) 36008055-36026169 protein_coding
ENSDART00000140327 (alg5-002) 36008076-36015866 processed_transcript
ENSDART00000144589 (alg5-003) 36008056-36015852 processed_transcript
CIL_0000PF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120693-ENSG00000120697 CGP 9606 13:36844831-37000261
GeneTranscriptPositionBiotype
ENSG00000120693 (SMAD9)
SMAD family member 9 		ENST00000350148 (SMAD9-001) 36844831-36920238 protein_coding
ENST00000379826 (SMAD9-201) 36844831-36920272 protein_coding
ENST00000399275 (SMAD9-002) 36844831-36879829 protein_coding
ENST00000483941 (SMAD9-003) 36879462-36920765 processed_transcript
ENSG00000120697 (ALG5)
ALG5, dolichyl-phosphate beta-glucosyltransferase 		ENST00000239891 (ALG5-001) 36949830-36999367 protein_coding
ENST00000443765 (ALG5-201) 36949775-36999367 protein_coding
ENST00000460230 (ALG5-003) 36949994-36968056 processed_transcript
ENST00000486410 (ALG5-002) 36949849-36952869 processed_transcript
ENST00000496689 (ALG5-004) 36985649-37000261 processed_transcript
ENSG00000226161 (EIF4A1P5)
eukaryotic translation initiation factor 4A1 pseudogene 5 		ENST00000428062 (EIF4A1P5-001) 36938400-36939494 processed_pseudogene
ENSG00000228825 (LAMTOR3P1)
late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 1 		ENST00000428620 (LAMTOR3P1-001) 36922539-36922908 processed_pseudogene
ENSG00000232378 (RPL29P28)
ribosomal protein L29 pseudogene 28 		ENST00000421928 (RPL29P28-001) 36926438-36927219 processed_pseudogene
ENSG00000236711 (SMAD9-IT1)
SMAD9 intronic transcript 1 		ENST00000437983 (SMAD9-IT1-001) 36849366-36850046 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000PF_0001ENSDARG00000021938ENSDART00000028618ENSDART00000132823ENSDART00000138281ENSDART00000145509ENSDARG00000061235ENSDART00000087114ENSDART00000131279ENSDART00000140327ENSDART00000144589CIL_0000PF_0002ENSG00000120693ENST00000350148ENST00000379826ENST00000399275ENST00000483941ENSG00000120697ENST00000239891ENST00000443765ENST00000460230ENST00000486410ENST00000496689ENSG00000226161ENST00000428062ENSG00000228825ENST00000428620ENSG00000232378ENST00000421928ENSG00000236711ENST00000437983
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000PF_0001ENSDARG00000021938ENSDART00000028618ENSDART00000132823ENSDARG00000061235ENSDART00000087114ENSDART00000131279ENSDART00000140327ENSDART00000144589CIL_0000PF_0002ENSG00000120693ENST00000350148ENST00000379826ENST00000399275ENSG00000120697ENST00000239891ENST00000443765ENSG00000226161ENST00000428062ENSG00000228825ENST00000428620ENSG00000232378ENST00000421928ENSG00000236711ENST00000437983
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021938 ENSDART00000028618 N/A N/A N/A 4.011±0.79 N/A N/A 63.057±49.42 14.281±10.37 N/A N/A 2.645±0.00 N/A N/A N/A
ENSDART00000132823 N/A N/A N/A N/A N/A N/A 3.694±1.15 0.609±0.00 0.770±0.00 N/A N/A N/A N/A N/A
ENSDART00000138281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000061235 ENSDART00000087114 N/A N/A N/A 5.127±3.50 N/A N/A 10.408±0.25 21.858±0.00 2.168±0.00 N/A 2.249±0.00 N/A N/A N/A
ENSDART00000131279 N/A N/A N/A 1.659±0.34 N/A N/A N/A 5.826±0.00 N/A N/A 2.649±0.00 N/A N/A N/A
ENSDART00000140327 N/A N/A N/A N/A N/A N/A N/A N/A 1.130±0.00 N/A 3.027±0.00 N/A N/A N/A
ENSDART00000144589 N/A N/A N/A N/A N/A N/A 0.462±0.00 18.261±9.48 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120693 ENST00000350148 1.010±0.00 N/A 0.401±0.00 2.301±1.61 1.066±0.00 2.647±1.07 0.714±0.00 0.981±0.00 1.040±0.82 1.423±0.25 0.305±0.00 1.218±1.03 0.264±0.00 2.165±0.00
ENST00000379826 1.231±0.00 0.855±0.00 N/A N/A N/A N/A N/A N/A 1.420±0.00 0.279±0.00 N/A 0.298±0.04 0.847±0.18 N/A
ENST00000399275 0.472±0.00 1.346±0.00 N/A 2.469±1.41 1.588±1.30 N/A 0.327±0.05 1.283±0.00 N/A 1.015±0.00 0.536±0.12 1.719±1.06 0.257±0.00 3.021±0.00
ENST00000483941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000120697 ENST00000239891 9.931±0.00 19.251±0.00 1.247±0.00 4.734±2.18 10.539±6.29 5.008±2.75 2.892±1.84 10.119±6.45 14.477±11.55 5.605±2.68 6.762±0.00 20.727±11.65 18.242±4.67 13.205±3.17
ENST00000443765 6.223±0.00 4.556±0.00 N/A 3.265±0.00 3.100±0.00 2.245±0.00 N/A N/A N/A N/A 0.943±0.22 N/A N/A 2.344±0.00
ENST00000460230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226161 ENST00000428062 0.012±0.00 0.039±0.00 N/A N/A 0.106±0.09 0.049±0.00 0.012±0.00 N/A N/A N/A N/A 0.027±0.00 N/A 0.047±0.00
ENSG00000228825 ENST00000428620 N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000232378 ENST00000421928 0.114±0.00 0.366±0.00 N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A 0.105±0.00 N/A N/A 0.073±0.00
ENSG00000236711 ENST00000437983 0.444±0.00 0.490±0.00 N/A 0.062±0.00 0.572±0.00 0.390±0.02 0.143±0.00 0.391±0.00 0.022±0.00 N/A N/A 0.196±0.00 0.050±0.00 0.082±0.00

Loading