C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389704 EXOSC8-003 ENSG00000120699 9606 + 13:37000541-37009401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389704
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389704 11.252±0.00 13.758±0.00 5.018±0.00 6.434±1.43 7.370±0.68 4.635±2.85 6.364±4.21 8.716±0.00 7.465±0.00 6.073±3.69 17.423±4.70 14.950±3.82 33.860±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PF CIL_0000PF_0002 CGP 13:36844831-37000261
CIL_0000PE CIL_0000PE_0002 CGP 13:36949775-37009613
CIL_0006CQ CIL_0006CQ_0002 CGP 13:36998816-37059713

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000178 IDA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017091 IDA AU-rich element binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029316 Exosc8-001 protein_coding Mus_musculus 0 1062
ENSMUST00000134892 Exosc8-006 retained_intron Mus_musculus 0 636
ENSMUST00000150923 Exosc8-003 retained_intron Mus_musculus 0 575
ENSMUST00000153224 Exosc8-004 protein_coding Mus_musculus 0 420
ENSMUST00000154787 Exosc8-008 nonsense_mediated_decay Mus_musculus 0 364
ENSMUST00000127112 Exosc8-002 retained_intron Mus_musculus 0 318
ENSMUST00000140935 Exosc8-007 retained_intron Mus_musculus 0 211
ENSMUST00000135935 Exosc8-005 retained_intron Mus_musculus 1e-38 165

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