C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation termination factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120705 ETF1 9606 - 5:138506095-138543300 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360541 ETF1-001 138506099-138543300 protein_coding
  ENST00000499810 ETF1-002 138506095-138543229 protein_coding
  ENST00000503014 ETF1-003 138507990-138541711 protein_coding
  ENST00000503183 ETF1-007 138512699-138517641 retained_intron
  ENST00000506345 ETF1-004 138511104-138517662 retained_intron
  ENST00000507939 ETF1-006 138513651-138543209 protein_coding
  ENST00000512198 ETF1-008 138511525-138543151 nonsense_mediated_decay
  ENST00000514005 ETF1-005 138517561-138541686 processed_transcript
  ENST00000572514 ETF1-009 138512772-138543216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360541ENST00000499810ENST00000503014
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360541 31.003±0.00 22.060±0.00 1.412±0.00 11.467±6.19 20.942±13.61 15.019±10.15 12.283±8.33 26.376±0.00 10.701±1.93 19.556±11.09 12.785±11.76 14.724±7.92 20.967±0.97 18.425±6.01
ENST00000499810 N/A N/A 0.999±0.00 1.299±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503014 N/A N/A 1.772±0.00 N/A 1.631±0.00 N/A N/A N/A N/A N/A 15.531±0.00 5.673±3.54 16.077±0.00 18.446±9.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DC CIL_0005DC_0001 CGP 5:138465490-138543300
CIL_0005DB CIL_0005DB_0001 CGP 5:138506095-138575444

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003747 TAS translation release factor activity
GO:0005515 IPI protein binding
GO:0005737 IEA:TAS cytoplasm
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006415 IEA:TAS translational termination
GO:0006449 TAS regulation of translational termination
GO:0006479 IDA protein methylation
GO:0008079 TAS translation termination factor activity
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016149 IEA translation release factor activity, codon specific
GO:0043022 TAS ribosome binding
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043976 etf1 eukaryotic translation termination factor 1 protein_coding Danio_rerio
ENSMUSG00000024360 Etf1 eukaryotic translation termination factor 1 protein_coding Mus_musculus

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