C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation termination factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360541 ETF1-001 ENSG00000120705 9606 - 5:138506099-138543300 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360541 31.003±0.00 22.060±0.00 1.412±0.00 11.467±6.19 20.942±13.61 15.019±10.15 12.283±8.33 26.376±0.00 10.701±1.93 19.556±11.09 12.785±11.76 14.724±7.92 20.967±0.97 18.425±6.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DC CIL_0005DC_0001 CGP 5:138465490-138543300
CIL_0005DB CIL_0005DB_0001 CGP 5:138506095-138575444

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003747 TAS translation release factor activity
GO:0005515 IPI protein binding
GO:0005737 IEA:TAS cytoplasm
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006415 IEA:TAS translational termination
GO:0006449 TAS regulation of translational termination
GO:0006479 IDA protein methylation
GO:0008079 TAS translation termination factor activity
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016149 IEA translation release factor activity, codon specific
GO:0043022 TAS ribosome binding
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025218 Etf1-001 protein_coding Mus_musculus 0 4748
ENSMUST00000180351 Etf1-002 protein_coding Mus_musculus 0 200

Loading