C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005DB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120705-ENSG00000113013 CGP 9606 5:138506095-138575444
GeneTranscriptPositionBiotype
ENSG00000113013 (HSPA9)
heat shock 70kDa protein 9 (mortalin) 		ENST00000297185 (HSPA9-001) 138554882-138575444 protein_coding
ENST00000501917 (HSPA9-012) 138555360-138566718 processed_transcript
ENST00000504810 (HSPA9-010) 138568968-138575166 protein_coding
ENST00000504902 (HSPA9-008) 138567001-138575340 nonsense_mediated_decay
ENST00000505110 (HSPA9-004) 138568966-138575401 nonsense_mediated_decay
ENST00000506477 (HSPA9-005) 138570799-138575411 retained_intron
ENST00000507097 (HSPA9-002) 138557342-138575401 retained_intron
ENST00000507115 (HSPA9-003) 138568925-138575403 nonsense_mediated_decay
ENST00000507886 (HSPA9-011) 138570977-138575009 protein_coding
ENST00000508003 (HSPA9-006) 138559720-138561789 retained_intron
ENST00000512328 (HSPA9-007) 138556047-138558631 nonsense_mediated_decay
ENST00000523929 (HSPA9-013) 138558553-138566711 nonsense_mediated_decay
ENST00000524109 (HSPA9-014) 138555827-138557891 retained_intron
ENSG00000120705 (ETF1)
eukaryotic translation termination factor 1 		ENST00000360541 (ETF1-001) 138506099-138543300 protein_coding
ENST00000499810 (ETF1-002) 138506095-138543229 protein_coding
ENST00000503014 (ETF1-003) 138507990-138541711 protein_coding
ENST00000503183 (ETF1-007) 138512699-138517641 retained_intron
ENST00000506345 (ETF1-004) 138511104-138517662 retained_intron
ENST00000507939 (ETF1-006) 138513651-138543209 protein_coding
ENST00000512198 (ETF1-008) 138511525-138543151 nonsense_mediated_decay
ENST00000514005 (ETF1-005) 138517561-138541686 processed_transcript
ENST00000572514 (ETF1-009) 138512772-138543216 protein_coding
ENSG00000206989 (SNORD63)
small nucleolar RNA, C/D box 63 		ENST00000384262 (SNORD63-201) 138561043-138561110 snoRNA
ENSG00000222937 (SNORD63)
Small nucleolar RNA SNORD63 		ENST00000411005 (SNORD63.1-201) 138558970-138559039 snoRNA
ENSG00000278947 (AC011385.1)
 ENST00000625173 (AC011385.1-201) 138552161-138552361 pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0005DB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024360-ENSMUSG00000024359 CGP 10090 18:34902785-34954357
GeneTranscriptPositionBiotype
ENSMUSG00000024359 (Hspa9)
heat shock protein 9 		ENSMUST00000025217 (Hspa9-001) 34937414-34954357 protein_coding
ENSMUST00000172829 (Hspa9-003) 34938696-34940862 retained_intron
ENSMUST00000173701 (Hspa9-002) 34938267-34939310 retained_intron
ENSMUST00000173806 (Hspa9-004) 34948172-34951573 retained_intron
ENSMUSG00000024360 (Etf1)
eukaryotic translation termination factor 1 		ENSMUST00000025218 (Etf1-001) 34902785-34932007 protein_coding
ENSMUST00000180351 (Etf1-002) 34931834-34931941 protein_coding
ENSMUSG00000065904 (Gm26109)
predicted gene, 26109 		ENSMUST00000083970 (Gm26109-201) 34942644-34942713 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005DB_0001ENSG00000113013ENST00000297185ENST00000501917ENST00000504810ENST00000504902ENST00000505110ENST00000506477ENST00000507097ENST00000507115ENST00000507886ENST00000508003ENST00000512328ENST00000523929ENST00000524109ENSG00000120705ENST00000360541ENST00000499810ENST00000503014ENST00000503183ENST00000506345ENST00000507939ENST00000512198ENST00000514005ENST00000572514ENSG00000206989ENST00000384262ENSG00000222937ENST00000411005ENSG00000278947ENST00000625173CIL_0005DB_0002ENSMUSG00000024359ENSMUST00000025217ENSMUST00000172829ENSMUST00000173701ENSMUST00000173806ENSMUSG00000024360ENSMUST00000025218ENSMUST00000180351ENSMUSG00000065904ENSMUST00000083970
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005DB_0001ENSG00000113013ENST00000297185ENST00000507097ENST00000507115ENST00000512328ENST00000524109ENSG00000120705ENST00000360541ENST00000499810ENST00000503014ENSG00000206989ENST00000384262ENSG00000222937ENST00000411005ENSG00000278947ENST00000625173CIL_0005DB_0002ENSMUSG00000024359ENSMUST00000025217ENSMUSG00000024360ENSMUST00000025218ENSMUSG00000065904ENSMUST00000083970
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113013 ENST00000297185 28.670±0.00 44.458±0.00 8.950±0.00 35.196±15.98 8.931±0.20 5.809±0.51 37.619±26.23 8.708±1.33 13.382±0.00 21.856±12.54 46.161±24.89 23.256±22.46 7.619±0.42 15.312±0.00
ENST00000501917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.846±0.00 N/A N/A N/A
ENST00000507115 N/A N/A N/A N/A 21.708±0.00 30.309±0.00 N/A 43.399±0.00 N/A N/A 40.841±0.00 N/A N/A N/A
ENST00000507886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512328 38.249±0.00 N/A N/A 73.813±0.00 N/A 31.727±0.00 N/A N/A N/A N/A N/A 39.850±0.00 53.619±0.00 47.825±0.25
ENST00000523929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.662±0.00 23.014±0.00 25.038±0.00
ENSG00000120705 ENST00000360541 31.003±0.00 22.060±0.00 1.412±0.00 11.467±6.19 20.942±13.61 15.019±10.15 12.283±8.33 26.376±0.00 10.701±1.93 19.556±11.09 12.785±11.76 14.724±7.92 20.967±0.97 18.425±6.01
ENST00000499810 N/A N/A 0.999±0.00 1.299±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503014 N/A N/A 1.772±0.00 N/A 1.631±0.00 N/A N/A N/A N/A N/A 15.531±0.00 5.673±3.54 16.077±0.00 18.446±9.25
ENST00000503183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206989 ENST00000384262 N/A N/A N/A N/A 0.709±0.00 N/A N/A 1.773±0.00 N/A N/A N/A 55.856±0.00 N/A N/A
ENSG00000222937 ENST00000411005 3.374±0.00 11.334±0.00 N/A 0.843±0.00 3.337±0.00 2.343±0.00 N/A 1.633±0.00 N/A N/A N/A 66.135±0.00 N/A 5.668±0.00
ENSG00000278947 ENST00000625173 0.100±0.00 0.723±0.00 N/A N/A 0.108±0.00 N/A 0.097±0.00 0.875±0.00 0.181±0.00 N/A N/A N/A N/A 0.185±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024359 ENSMUST00000025217 54.337±2.97 272.215±21.97 48.365±0.52 45.905±19.91 55.222±8.08 31.701±2.25 91.906±6.74 90.474±7.70 87.380±10.29 26.214±1.34 100.546±16.30 67.190±27.65 108.772±46.50 40.743±5.49
ENSMUST00000172829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024360 ENSMUST00000025218 18.522±2.37 15.379±2.35 24.490±2.87 18.928±2.49 14.202±2.18 13.111±1.43 13.251±0.55 14.783±1.46 19.255±7.96 15.554±0.96 24.003±0.84 20.275±8.84 58.988±31.50 23.809±4.93
ENSMUST00000180351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065904 ENSMUST00000083970 N/A N/A N/A 788.339±0.00 N/A N/A N/A N/A N/A N/A N/A 770.211±0.00 3941.270±0.00 N/A

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