C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 3B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120733 KDM3B 9606 + 5:138352596-138437028 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314358 KDM3B-001 138352596-138437027 protein_coding
  ENST00000504095 KDM3B-006 138397878-138399899 retained_intron
  ENST00000505756 KDM3B-007 138424135-138425857 retained_intron
  ENST00000507996 KDM3B-004 138386577-138436032 nonsense_mediated_decay
  ENST00000508386 KDM3B-009 138417808-138420785 processed_transcript
  ENST00000509468 KDM3B-008 138426741-138428086 retained_intron
  ENST00000510866 KDM3B-002 138372674-138437028 nonsense_mediated_decay
  ENST00000512928 KDM3B-005 138372793-138381748 retained_intron
  ENST00000542866 KDM3B-201 138377811-138436937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314358ENST00000507996ENST00000510866ENST00000542866
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314358 9.320±0.00 6.448±0.00 2.724±0.00 4.246±0.71 4.803±0.19 5.526±0.12 4.561±2.21 4.463±0.69 4.301±2.79 6.005±0.17 7.715±5.34 5.920±3.27 5.131±0.93 5.718±0.16
ENST00000507996 N/A 5.039±0.00 3.826±0.00 2.915±0.50 5.133±1.12 3.834±0.64 1.997±0.00 N/A 5.676±0.00 3.493±0.00 5.396±0.67 5.945±2.93 N/A N/A
ENST00000510866 N/A N/A N/A 0.695±0.00 N/A N/A N/A N/A N/A 1.025±0.00 0.924±0.00 1.752±0.00 1.290±0.00 3.573±0.00
ENST00000542866 6.082±0.00 4.606±0.00 N/A 4.248±0.00 4.881±0.00 6.229±0.00 4.250±0.00 6.476±0.00 1.911±0.00 5.640±0.00 8.376±0.00 5.246±1.85 2.961±0.45 7.173±3.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D7 CIL_0005D7_0001 CGP 5:138331935-138437028
CIL_0005D6 CIL_0005D6_0001 CGP 5:138352596-138446969

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0046872 IEA metal ion binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062267 IM:7163548 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000038773 Kdm3b KDM3B lysine (K)-specific demethylase 3B protein_coding Mus_musculus

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