C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542866 KDM3B-201 ENSG00000120733 9606 + 5:138377811-138436937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000542866
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000542866 6.082±0.00 4.606±0.00 4.248±0.00 4.881±0.00 6.229±0.00 4.250±0.00 6.476±0.00 1.911±0.00 5.640±0.00 8.376±0.00 5.246±1.85 2.961±0.45 7.173±3.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D7 CIL_0005D7_0001 CGP 5:138331935-138437028
CIL_0005D6 CIL_0005D6_0001 CGP 5:138352596-138446969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0046872 IEA metal ion binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043775 Kdm3b-201 protein_coding Mus_musculus 0 3910

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