C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005D7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120709-ENSG00000120733 CGP 9606 5:138331935-138437028
GeneTranscriptPositionBiotype
ENSG00000120709 (FAM53C)
family with sequence similarity 53, member C 		ENST00000239906 (FAM53C-001) 138338032-138349729 protein_coding
ENST00000434981 (FAM53C-002) 138337511-138346972 protein_coding
ENST00000505136 (FAM53C-010) 138341181-138345308 processed_transcript
ENST00000505768 (FAM53C-005) 138338015-138345245 processed_transcript
ENST00000506710 (FAM53C-009) 138333677-138337090 processed_transcript
ENST00000507506 (FAM53C-007) 138337554-138345455 processed_transcript
ENST00000511024 (FAM53C-012) 138338266-138343023 retained_intron
ENST00000511276 (FAM53C-008) 138338267-138345215 protein_coding
ENST00000511595 (FAM53C-003) 138332105-138337146 processed_transcript
ENST00000512180 (FAM53C-006) 138331935-138345058 processed_transcript
ENST00000513056 (FAM53C-004) 138338266-138347080 protein_coding
ENSG00000120733 (KDM3B)
lysine (K)-specific demethylase 3B 		ENST00000314358 (KDM3B-001) 138352596-138437027 protein_coding
ENST00000504095 (KDM3B-006) 138397878-138399899 retained_intron
ENST00000505756 (KDM3B-007) 138424135-138425857 retained_intron
ENST00000507996 (KDM3B-004) 138386577-138436032 nonsense_mediated_decay
ENST00000508386 (KDM3B-009) 138417808-138420785 processed_transcript
ENST00000509468 (KDM3B-008) 138426741-138428086 retained_intron
ENST00000510866 (KDM3B-002) 138372674-138437028 nonsense_mediated_decay
ENST00000512928 (KDM3B-005) 138372793-138381748 retained_intron
ENST00000542866 (KDM3B-201) 138377811-138436937 protein_coding
ENSG00000158402 (CDC25C)
cell division cycle 25C 		ENST00000323760 (CDC25C-001) 138285265-138331835 protein_coding
ENST00000348983 (CDC25C-201) 138285265-138331877 protein_coding
ENST00000415130 (CDC25C-002) 138285573-138331794 protein_coding
ENST00000503022 (CDC25C-005) 138291985-138331872 protein_coding
ENST00000504831 (CDC25C-008) 138325918-138328882 retained_intron
ENST00000510119 (CDC25C-006) 138325815-138338325 protein_coding
ENST00000513970 (CDC25C-003) 138285580-138338355 protein_coding
ENST00000514017 (CDC25C-007) 138285744-138292114 protein_coding
ENST00000514555 (CDC25C-004) 138285692-138331180 protein_coding
ENSG00000249971 (RP11-256P1.1)
 ENST00000504539 (RP11-256P1.1-001) 138347027-138349641 antisense
CIL_0005D7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034300-ENSMUSG00000038773 CGP 10090 18:34758906-34839370
GeneTranscriptPositionBiotype
ENSMUSG00000034300 (Fam53c)
family with sequence similarity 53, member C 		ENSMUST00000049281 (Fam53c-201) 34758906-34773760 protein_coding
ENSMUST00000097622 (Fam53c-202) 34759556-34773738 protein_coding
ENSMUSG00000038773 (Kdm3b)
KDM3B lysine (K)-specific demethylase 3B 		ENSMUST00000043775 (Kdm3b-201) 34777008-34839370 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005D7_0001ENSG00000120709ENST00000239906ENST00000434981ENST00000505136ENST00000505768ENST00000506710ENST00000507506ENST00000511024ENST00000511276ENST00000511595ENST00000512180ENST00000513056ENSG00000120733ENST00000314358ENST00000504095ENST00000505756ENST00000507996ENST00000508386ENST00000509468ENST00000510866ENST00000512928ENST00000542866ENSG00000158402ENST00000323760ENST00000348983ENST00000415130ENST00000503022ENST00000504831ENST00000510119ENST00000513970ENST00000514017ENST00000514555ENSG00000249971ENST00000504539CIL_0005D7_0002ENSMUSG00000034300ENSMUST00000049281ENSMUST00000097622ENSMUSG00000038773ENSMUST00000043775
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005D7_0001ENSG00000120709ENST00000239906ENST00000434981ENST00000511024ENST00000513056ENSG00000120733ENST00000314358ENST00000507996ENST00000510866ENST00000542866ENSG00000158402ENST00000323760ENST00000503022ENSG00000249971ENST00000504539CIL_0005D7_0002ENSMUSG00000034300ENSMUST00000049281ENSMUST00000097622ENSMUSG00000038773ENSMUST00000043775
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120709 ENST00000239906 3.059±0.00 2.847±0.00 1.718±0.00 8.149±0.00 2.504±0.00 6.995±0.00 2.828±1.80 N/A 3.760±0.00 3.675±0.00 5.625±0.54 5.400±3.71 4.709±2.46 5.553±0.00
ENST00000434981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.744±0.00
ENST00000505136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511024 N/A N/A 0.739±0.00 N/A 1.267±0.00 N/A N/A 0.641±0.00 N/A 1.524±0.00 N/A N/A N/A N/A
ENST00000511276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.295±0.00 32.570±0.00
ENSG00000120733 ENST00000314358 9.320±0.00 6.448±0.00 2.724±0.00 4.246±0.71 4.803±0.19 5.526±0.12 4.561±2.21 4.463±0.69 4.301±2.79 6.005±0.17 7.715±5.34 5.920±3.27 5.131±0.93 5.718±0.16
ENST00000504095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507996 N/A 5.039±0.00 3.826±0.00 2.915±0.50 5.133±1.12 3.834±0.64 1.997±0.00 N/A 5.676±0.00 3.493±0.00 5.396±0.67 5.945±2.93 N/A N/A
ENST00000508386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510866 N/A N/A N/A 0.695±0.00 N/A N/A N/A N/A N/A 1.025±0.00 0.924±0.00 1.752±0.00 1.290±0.00 3.573±0.00
ENST00000512928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542866 6.082±0.00 4.606±0.00 N/A 4.248±0.00 4.881±0.00 6.229±0.00 4.250±0.00 6.476±0.00 1.911±0.00 5.640±0.00 8.376±0.00 5.246±1.85 2.961±0.45 7.173±3.88
ENSG00000158402 ENST00000323760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.578±0.00 1.203±0.00 12.156±0.00
ENST00000348983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503022 N/A N/A N/A N/A N/A 1.837±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249971 ENST00000504539 N/A 8.641±0.00 N/A 8.837±0.00 10.225±0.00 N/A N/A 10.825±0.00 4.288±0.00 11.153±0.00 12.805±1.53 19.102±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034300 ENSMUST00000049281 N/A 19.022±2.24 N/A N/A N/A 8.896±4.57 2.916±0.27 5.180±0.62 2.588±0.54 N/A N/A N/A 0.905±0.00 18.939±6.81
ENSMUST00000097622 10.364±2.68 N/A 12.148±1.43 11.269±2.64 14.015±4.15 8.027±3.93 3.684±0.84 6.027±2.58 4.988±2.71 11.064±1.04 6.515±0.74 17.830±5.68 11.727±6.03 N/A
ENSMUSG00000038773 ENSMUST00000043775 7.211±1.74 6.120±1.52 12.766±0.73 10.703±3.06 7.017±1.37 8.350±1.80 2.986±0.66 5.239±0.68 4.334±1.94 9.760±1.05 2.488±1.39 9.262±1.45 5.680±2.52 3.659±1.05

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