C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 2, group C, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120798 NR2C1 9606 - 12:95020229-95073703 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330677 NR2C1-004 95030418-95073537 protein_coding
  ENST00000333003 NR2C1-001 95020229-95073703 protein_coding
  ENST00000393101 NR2C1-002 95030409-95073580 protein_coding
  ENST00000545833 NR2C1-005 95028458-95067384 processed_transcript
  ENST00000546367 NR2C1-010 95058353-95073510 processed_transcript
  ENST00000546416 NR2C1-014 95022334-95049492 retained_intron
  ENST00000547469 NR2C1-009 95067337-95073017 protein_coding
  ENST00000547594 NR2C1-013 95026833-95057757 processed_transcript
  ENST00000548252 NR2C1-012 95049128-95058393 processed_transcript
  ENST00000548966 NR2C1-007 95058409-95073545 processed_transcript
  ENST00000549482 NR2C1-008 95066928-95073503 retained_intron
  ENST00000549617 NR2C1-016 95021921-95025349 retained_intron
  ENST00000551386 NR2C1-006 95059920-95073615 processed_transcript
  ENST00000551647 NR2C1-018 95021893-95040598 protein_coding
  ENST00000552417 NR2C1-011 95058420-95067370 processed_transcript
  ENST00000552484 NR2C1-015 95028106-95031394 retained_intron
  ENST00000552791 NR2C1-017 95030409-95051869 nonsense_mediated_decay
  ENST00000552861 NR2C1-003 95021893-95073569 retained_intron
  ENST00000622476 NR2C1-201 95028458-95073628 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330677ENST00000333003ENST00000393101ENST00000545833ENST00000546367ENST00000546416ENST00000548252ENST00000549617ENST00000551386ENST00000551647ENST00000552861ENST00000622476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330677 N/A N/A N/A N/A N/A 0.813±0.00 N/A N/A N/A N/A N/A 1.642±0.01 0.674±0.00 N/A
ENST00000333003 0.552±0.00 N/A 0.468±0.00 0.537±0.10 0.978±0.00 0.450±0.00 0.578±0.23 1.068±0.00 0.521±0.00 0.979±0.58 0.322±0.10 1.555±0.87 0.396±0.07 1.541±0.00
ENST00000393101 N/A N/A 0.590±0.00 N/A N/A N/A N/A 1.613±0.00 N/A N/A N/A 2.925±0.68 N/A 2.817±0.41
ENST00000545833 N/A N/A N/A N/A 1.255±0.00 1.440±0.00 N/A N/A N/A N/A N/A N/A 0.706±0.00 N/A
ENST00000546367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.897±0.00 5.830±0.00 17.892±0.00
ENST00000546416 N/A N/A N/A N/A 3.243±0.00 N/A N/A N/A N/A 1.712±0.00 N/A N/A N/A N/A
ENST00000548252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.772±0.00 N/A N/A N/A
ENST00000549617 N/A N/A N/A N/A N/A N/A 1.510±0.00 N/A N/A N/A 3.125±0.00 6.807±1.13 1.417±0.15 7.034±0.00
ENST00000551386 N/A N/A N/A N/A N/A 3.736±0.00 N/A 7.050±0.00 N/A N/A N/A N/A N/A N/A
ENST00000551647 N/A 6.089±0.00 N/A N/A 2.766±0.00 2.158±0.00 N/A 3.671±0.00 2.615±0.00 2.081±0.00 0.970±0.00 4.545±0.00 2.450±0.00 6.806±0.23
ENST00000552861 0.986±0.00 1.852±0.00 N/A 1.310±0.20 0.806±0.26 0.682±0.20 1.722±0.00 1.158±0.29 0.890±0.16 1.585±0.70 0.836±0.26 0.982±0.00 0.691±0.23 1.832±0.29
ENST00000622476 2.248±0.00 N/A 1.278±0.00 1.145±0.00 1.430±0.00 N/A 1.644±0.73 N/A N/A 1.399±0.00 1.282±0.00 N/A 1.423±0.00 2.740±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XY CIL_0000XY_0002 CGP 12:94897055-95073703
CIL_0005XD CIL_0005XD_0002 CGP 12:95020229-95217482

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004872 TAS receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016605 IEA PML body
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0048386 IEA positive regulation of retinoic acid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045527 nr2c1 nuclear receptor subfamily 2, group C, member 1 protein_coding Danio_rerio
ENSMUSG00000005897 Nr2c1 nuclear receptor subfamily 2, group C, member 1 protein_coding Mus_musculus

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