C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PAP associated domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121274 PAPD5 9606 + 16:50152918-50235310 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357464 PAPD5-004 50214226-50235310 nonsense_mediated_decay
  ENST00000436909 PAPD5-001 50152918-50231831 protein_coding
  ENST00000561678 PAPD5-002 50153794-50230403 protein_coding
  ENST00000562717 PAPD5-003 50154161-50235306 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357464ENST00000436909ENST00000561678ENST00000562717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357464 N/A N/A N/A 0.170±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436909 1.895±0.00 2.558±0.00 1.382±0.00 1.726±0.18 2.021±0.92 2.815±1.79 0.978±0.19 3.539±0.30 2.851±1.01 2.214±0.67 0.876±0.74 2.707±0.56 2.350±0.19 3.445±1.62
ENST00000561678 0.415±0.00 N/A N/A 1.382±0.06 2.065±0.00 2.507±0.00 0.531±0.00 0.941±0.00 1.458±0.00 2.132±0.00 0.805±0.00 3.531±0.00 5.257±0.00 12.858±0.00
ENST00000562717 N/A N/A N/A 1.478±0.00 1.356±0.00 N/A 0.388±0.00 N/A N/A 1.837±0.00 0.909±0.00 N/A N/A 10.208±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PP CIL_0003PP_0001 CGP 16:50065941-50235310
CIL_0000OK CIL_0000OK_0001 CGP 16:50152918-50318135

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003887 IEA DNA-directed DNA polymerase activity
GO:0004652 IEA polynucleotide adenylyltransferase activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0007067 IEA mitotic nuclear division
GO:0008152 IEA metabolic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0071044 IMP histone mRNA catabolic process
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060071 PAPD5 PAP associated domain containing 5 protein_coding Danio_rerio
ENSMUSG00000036779 Papd5 PAP associated domain containing 5 protein_coding Mus_musculus

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