C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAP associated domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436909 PAPD5-001 ENSG00000121274 9606 + 16:50152918-50231831 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000436909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000436909 1.895±0.00 2.558±0.00 1.382±0.00 1.726±0.18 2.021±0.92 2.815±1.79 0.978±0.19 3.539±0.30 2.851±1.01 2.214±0.67 0.876±0.74 2.707±0.56 2.350±0.19 3.445±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PP CIL_0003PP_0001 CGP 16:50065941-50235310
CIL_0000OK CIL_0000OK_0001 CGP 16:50152918-50318135

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003887 IEA DNA-directed DNA polymerase activity
GO:0004652 IEA polynucleotide adenylyltransferase activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0007067 IEA mitotic nuclear division
GO:0008152 IEA metabolic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0071044 IMP histone mRNA catabolic process
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118952 Papd5-002 protein_coding Mus_musculus 0 4916
ENSMUST00000119033 Papd5-001 protein_coding Mus_musculus 0 4916
ENSMUST00000066748 Papd5-201 protein_coding Mus_musculus 0 3650
ENSMUST00000154115 Papd5-004 protein_coding Mus_musculus 0 675
ENSMUST00000125043 Papd5-003 retained_intron Mus_musculus 0 586
ENSMUST00000120746 Ncald-002 protein_coding Mus_musculus 0.0002 53
ENSMUST00000119730 Ncald-003 protein_coding Mus_musculus 0.0002 53
ENSMUST00000132423 Ncald-011 processed_transcript Mus_musculus 0.00004 53

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