C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155393-ENSG00000121274 CGP 9606 16:50065941-50235310
GeneTranscriptPositionBiotype
ENSG00000121274 (PAPD5)
PAP associated domain containing 5 		ENST00000357464 (PAPD5-004) 50214226-50235310 nonsense_mediated_decay
ENST00000436909 (PAPD5-001) 50152918-50231831 protein_coding
ENST00000561678 (PAPD5-002) 50153794-50230403 protein_coding
ENST00000562717 (PAPD5-003) 50154161-50235306 processed_transcript
ENSG00000155393 (HEATR3)
HEAT repeat containing 3 		ENST00000299192 (HEATR3-001) 50065941-50106387 protein_coding
ENST00000561525 (HEATR3-007) 50078944-50084620 retained_intron
ENST00000561819 (HEATR3-005) 50065996-50070238 processed_transcript
ENST00000564942 (HEATR3-006) 50080032-50094805 processed_transcript
ENST00000569324 (HEATR3-004) 50066006-50066848 retained_intron
ENSG00000202124 (RNY4P3)
RNA, Ro-associated Y4 pseudogene 3 		ENST00000365254 (RNY4P3-201) 50098264-50098358 misc_RNA
ENSG00000260031 (RPL10P14)
ribosomal protein L10 pseudogene 14 		ENST00000565265 (RPL10P14-001) 50151280-50151577 processed_pseudogene
ENSG00000279356 (RP11-429P3.8)
 ENST00000623307 (RP11-429P3.8-001) 50072862-50074986 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0003PP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031657-ENSMUSG00000036779 CGP 10090 8:88137855-88259722
GeneTranscriptPositionBiotype
ENSMUSG00000031657 (Heatr3)
HEAT repeat containing 3 		ENSMUST00000034079 (Heatr3-001) 88137855-88172027 protein_coding
ENSMUST00000121949 (Heatr3-002) 88137856-88171997 protein_coding
ENSMUST00000131682 (Heatr3-004) 88157065-88158745 retained_intron
ENSMUST00000137452 (Heatr3-005) 88164482-88167045 retained_intron
ENSMUST00000146946 (Heatr3-003) 88161518-88172027 retained_intron
ENSMUSG00000036779 (Papd5)
PAP associated domain containing 5 		ENSMUST00000066748 (Papd5-201) 88199213-88259716 protein_coding
ENSMUST00000118952 (Papd5-002) 88199214-88259722 protein_coding
ENSMUST00000119033 (Papd5-001) 88199213-88259722 protein_coding
ENSMUST00000125043 (Papd5-003) 88245285-88249211 retained_intron
ENSMUST00000154115 (Papd5-004) 88251972-88257411 protein_coding
ENSMUSG00000055968 (Gm9988)
predicted gene 9988 		ENSMUST00000069786 (Gm9988-201) 88138079-88138517 pseudogene
ENSMUSG00000062704 (9430002A10Rik)
RIKEN cDNA 9430002A10 gene 		ENSMUST00000074808 (9430002A10Rik-201) 88174560-88175028 lincRNA
ENSMUST00000185395 (9430002A10Rik-001) 88174560-88175034 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PP_0001ENSG00000121274ENST00000357464ENST00000436909ENST00000561678ENST00000562717ENSG00000155393ENST00000299192ENST00000561525ENST00000561819ENST00000564942ENST00000569324ENSG00000202124ENST00000365254ENSG00000260031ENST00000565265ENSG00000279356ENST00000623307CIL_0003PP_0002ENSMUSG00000031657ENSMUST00000034079ENSMUST00000121949ENSMUST00000131682ENSMUST00000137452ENSMUST00000146946ENSMUSG00000036779ENSMUST00000066748ENSMUST00000118952ENSMUST00000119033ENSMUST00000125043ENSMUST00000154115ENSMUSG00000055968ENSMUST00000069786ENSMUSG00000062704ENSMUST00000074808ENSMUST00000185395
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PP_0001ENSG00000121274ENST00000357464ENST00000436909ENST00000561678ENST00000562717ENSG00000155393ENST00000299192ENSG00000202124ENST00000365254ENSG00000260031ENST00000565265ENSG00000279356ENST00000623307CIL_0003PP_0002ENSMUSG00000031657ENSMUST00000034079ENSMUST00000121949ENSMUST00000146946ENSMUSG00000036779ENSMUST00000066748ENSMUST00000118952ENSMUST00000119033ENSMUST00000154115ENSMUSG00000055968ENSMUST00000069786ENSMUSG00000062704ENSMUST00000074808ENSMUST00000185395
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121274 ENST00000357464 N/A N/A N/A 0.170±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436909 1.895±0.00 2.558±0.00 1.382±0.00 1.726±0.18 2.021±0.92 2.815±1.79 0.978±0.19 3.539±0.30 2.851±1.01 2.214±0.67 0.876±0.74 2.707±0.56 2.350±0.19 3.445±1.62
ENST00000561678 0.415±0.00 N/A N/A 1.382±0.06 2.065±0.00 2.507±0.00 0.531±0.00 0.941±0.00 1.458±0.00 2.132±0.00 0.805±0.00 3.531±0.00 5.257±0.00 12.858±0.00
ENST00000562717 N/A N/A N/A 1.478±0.00 1.356±0.00 N/A 0.388±0.00 N/A N/A 1.837±0.00 0.909±0.00 N/A N/A 10.208±0.84
ENSG00000155393 ENST00000299192 1.792±0.00 2.515±0.00 0.750±0.00 1.262±0.09 1.269±0.85 1.680±0.33 1.632±0.96 3.333±1.12 2.229±0.93 1.603±0.76 3.103±1.06 3.250±1.34 3.059±0.30 2.524±0.06
ENST00000561525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202124 ENST00000365254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.031±0.00 N/A N/A
ENSG00000260031 ENST00000565265 0.338±0.00 N/A N/A N/A 0.249±0.00 0.113±0.00 N/A 0.123±0.00 0.053±0.00 N/A 0.252±0.00 0.241±0.00 N/A 0.184±0.07
ENSG00000279356 ENST00000623307 0.152±0.00 0.491±0.00 0.210±0.00 0.262±0.20 0.383±0.20 0.350±0.33 0.117±0.05 0.083±0.06 0.034±0.01 0.177±0.15 0.052±0.00 0.166±0.20 0.030±0.01 0.143±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031657 ENSMUST00000034079 12.377±1.62 10.672±2.46 9.174±1.17 11.352±4.99 8.569±0.52 5.293±0.47 7.880±1.60 7.219±0.62 10.775±3.81 7.190±0.15 11.207±3.63 8.817±4.34 10.023±4.93 2.350±1.13
ENSMUST00000121949 N/A N/A N/A 2.743±0.00 11.213±0.00 N/A N/A N/A N/A N/A 3.262±0.07 7.572±1.54 6.064±3.45 1.307±0.00
ENSMUST00000131682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146946 N/A N/A N/A 3.434±0.00 N/A N/A 1.708±0.00 2.698±0.79 N/A N/A N/A 2.290±0.26 3.786±1.53 N/A
ENSMUSG00000036779 ENSMUST00000066748 1.955±0.11 5.800±3.98 N/A 1.999±0.66 4.134±1.97 5.165±1.80 1.220±0.24 4.330±0.95 2.107±0.54 4.316±0.40 N/A 6.657±3.07 2.631±0.00 N/A
ENSMUST00000118952 1.534±0.28 4.984±0.00 5.572±0.00 3.949±1.53 2.503±0.93 2.255±0.32 2.356±0.78 2.411±0.30 3.927±1.64 2.392±0.00 2.747±0.71 2.471±1.06 3.700±1.61 7.807±0.51
ENSMUST00000119033 4.099±1.79 3.645±1.04 1.509±0.45 4.132±0.09 2.787±0.85 1.858±0.00 2.192±0.66 4.080±1.59 2.695±0.89 5.527±0.92 2.598±0.00 2.578±0.82 3.697±0.90 11.161±5.65
ENSMUST00000125043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154115 3.841±0.69 N/A N/A 13.020±0.00 5.570±0.08 N/A 3.459±0.47 6.431±1.16 7.999±1.15 6.159±0.22 N/A 12.051±5.30 10.279±3.10 36.937±11.15
ENSMUSG00000055968 ENSMUST00000069786 N/A 5.440±0.47 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000062704 ENSMUST00000074808 0.116±0.02 N/A 0.184±0.00 0.446±0.02 0.239±0.08 N/A 0.439±0.09 0.255±0.13 0.290±0.17 0.080±0.00 0.499±0.17 0.926±0.01 0.715±0.35 1.229±0.14
ENSMUST00000185395 0.086±0.00 N/A 0.266±0.09 0.086±0.00 0.045±0.00 N/A N/A N/A 0.368±0.24 0.080±0.00 N/A 1.027±0.00 0.907±0.43 1.773±0.00

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