C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121481 RNF2 9606 + 1:185045364-185102608 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367509 RNF2-002 185045526-185101057 protein_coding
  ENST00000367510 RNF2-001 185045364-185102608 protein_coding
  ENST00000453650 RNF2-003 185046096-185098344 protein_coding
  ENST00000498201 RNF2-004 185045536-185092006 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367509ENST00000367510ENST00000453650
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367509 1.832±0.00 1.264±0.00 N/A N/A 1.875±0.00 0.852±0.00 0.930±0.00 0.828±0.34 1.692±0.00 0.842±0.01 N/A 2.534±0.23 4.778±0.00
ENST00000367510 0.890±0.00 N/A 2.396±0.02 1.365±0.49 1.531±0.83 1.359±0.00 0.353±0.00 1.104±0.45 2.441±0.00 1.728±0.00 2.356±1.16 1.945±0.49 2.357±0.51
ENST00000453650 3.502±0.00 1.284±0.00 N/A N/A 1.166±0.00 0.412±0.00 1.146±0.00 N/A N/A 0.615±0.00 12.155±0.00 7.300±5.54 20.913±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BL CIL_0001BL_0002 CGP 1:184790724-185102608

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA ubiquitin ligase complex
GO:0000278 IEA mitotic cell cycle
GO:0000791 IEA euchromatin
GO:0000792 IEA heterochromatin
GO:0001702 IEA gastrulation with mouth forming second
GO:0001739 IEA sex chromatin
GO:0003682 IEA chromatin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IDA:IEA zinc ion binding
GO:0009948 IEA anterior/posterior axis specification
GO:0016574 IEA histone ubiquitination
GO:0016604 IEA nuclear body
GO:0016874 IEA ligase activity
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0035518 IDA histone H2A monoubiquitination
GO:0036353 ISS histone H2A-K119 monoubiquitination
GO:0046872 IEA metal ion binding
GO:0071339 IDA MLL1 complex
GO:0071535 IPI RING-like zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010381 rnf2 ring finger protein 2 protein_coding Danio_rerio
ENSMUSG00000026484 Rnf2 ring finger protein 2 protein_coding Mus_musculus

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