C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367509 RNF2-002 ENSG00000121481 9606 + 1:185045526-185101057 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonHeartKidneyLiverLungMusclePlacentaTestisENST00000367509
Transcript ID Adipose Bladder Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000367509 1.832±0.00 1.264±0.00 1.875±0.00 0.852±0.00 0.930±0.00 0.828±0.34 1.692±0.00 0.842±0.01 2.534±0.23 4.778±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BL CIL_0001BL_0002 CGP 1:184790724-185102608

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA ubiquitin ligase complex
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IDA:IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0035518 IDA histone H2A monoubiquitination
GO:0036353 ISS histone H2A-K119 monoubiquitination
GO:0046872 IEA metal ion binding
GO:0071339 IDA MLL1 complex
GO:0071535 IPI RING-like zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186415 Rnf2-004 protein_coding Mus_musculus 0 1376
ENSMUST00000076110 Rnf2-001 protein_coding Mus_musculus 0 881
ENSMUST00000187048 Rnf2-002 protein_coding Mus_musculus 0 881
ENSMUST00000185945 Rnf2-006 processed_transcript Mus_musculus 0 743
ENSMUST00000190070 Rnf2-003 protein_coding Mus_musculus 0 592
ENSMUST00000188871 Rnf2-007 retained_intron Mus_musculus 0 566
ENSMUST00000187991 Rnf2-005 protein_coding Mus_musculus 0 366

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