C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121542 SEC22A 9606 + 3:123201927-123274130 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309934 SEC22A-002 123208322-123274130 protein_coding
  ENST00000466519 SEC22A-005 123202006-123223702 protein_coding
  ENST00000466950 SEC22A-007 123201929-123245930 nonsense_mediated_decay
  ENST00000473494 SEC22A-003 123201959-123271664 protein_coding
  ENST00000477063 SEC22A-008 123201927-123243950 processed_transcript
  ENST00000480631 SEC22A-004 123202019-123225171 protein_coding
  ENST00000481965 SEC22A-009 123201969-123271909 protein_coding
  ENST00000487572 SEC22A-006 123202051-123246011 protein_coding
  ENST00000491366 SEC22A-010 123202020-123223680 protein_coding
  ENST00000492595 SEC22A-001 123201958-123271722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000309934ENST00000481965ENST00000492595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000309934 N/A 1.814±0.00 N/A 0.498±0.00 N/A N/A N/A N/A N/A 0.612±0.00 0.138±0.00 0.843±0.00 N/A
ENST00000481965 N/A N/A 5.905±0.00 6.469±0.00 N/A 9.071±0.00 N/A N/A 9.822±0.00 4.686±0.00 2.572±0.00 8.280±0.00 N/A
ENST00000492595 4.294±0.00 N/A N/A 2.818±0.00 3.085±0.00 N/A 1.621±0.00 3.556±0.00 3.640±0.00 N/A 1.014±0.00 4.088±0.00 8.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0001 VISTA 3:122671455-123276444
CIL_000074 CIL_000074_0002 CGP 3:122909193-123225227
CIL_000073 CIL_000073_0002 CGP 3:123067062-123274130
CIL_00007A CIL_00007A_0002 CGP 3:123201927-123449758

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006810 IEA transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078328 sec22a SEC22 vesicle trafficking protein homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000034473 Sec22a SEC22 vesicle trafficking protein homolog A (S. cerevisiae) protein_coding Mus_musculus

Loading