C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034473 Sec22a 10090 - 16:35311131-35363918 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043521 Sec22a-001 35311131-35363918 protein_coding
  ENSMUST00000138355 Sec22a-002 35360673-35363852 retained_intron
  ENSMUST00000141087 Sec22a-004 35361045-35363847 processed_transcript
  ENSMUST00000154064 Sec22a-005 35314070-35347739 processed_transcript
  ENSMUST00000154216 Sec22a-003 35348910-35363815 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043521ENSMUST00000141087ENSMUST00000154064ENSMUST00000154216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043521 2.112±0.47 3.510±0.59 3.275±2.45 4.048±1.90 3.181±0.46 2.818±0.57 1.747±0.61 1.856±1.34 1.546±0.86 3.370±0.26 1.155±0.18 3.701±0.84 2.855±1.37 2.763±1.39
ENSMUST00000141087 21.884±2.14 N/A 8.996±0.00 N/A 10.421±2.02 13.592±4.61 9.820±3.59 14.165±4.26 5.070±0.78 17.062±3.25 N/A 9.601±1.81 9.647±0.00 N/A
ENSMUST00000154064 N/A 8.608±2.04 N/A N/A 8.944±1.27 7.674±1.25 N/A N/A 6.298±1.01 8.634±0.32 N/A 10.477±3.27 N/A 5.029±0.00
ENSMUST00000154216 N/A 2.174±0.80 N/A N/A N/A 1.769±0.00 N/A N/A N/A N/A N/A 1.964±0.32 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0002 VISTA 16:35298618-35902946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078328 sec22a SEC22 vesicle trafficking protein homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000121542 SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) protein_coding Homo_sapiens

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