C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309934 SEC22A-002 ENSG00000121542 9606 + 3:123208322-123274130 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLungMuscleOvaryENST00000309934
Transcript ID Adrenal Brain Lung Muscle Ovary
ENST00000309934 1.814±0.00 0.498±0.00 0.612±0.00 0.138±0.00 0.843±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0001 VISTA 3:122671455-123276444
CIL_000074 CIL_000074_0002 CGP 3:122909193-123225227
CIL_000073 CIL_000073_0002 CGP 3:123067062-123274130
CIL_00007A CIL_00007A_0002 CGP 3:123201927-123449758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006810 IEA transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043521 Sec22a-001 protein_coding Mus_musculus 0 1461
ENSMUST00000154064 Sec22a-005 processed_transcript Mus_musculus 0 396
ENSMUST00000154216 Sec22a-003 retained_intron Mus_musculus 0 385
ENSMUST00000141087 Sec22a-004 processed_transcript Mus_musculus 0 252
ENSMUST00000138355 Sec22a-002 retained_intron Mus_musculus 0 252

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