C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000481965 SEC22A-009 ENSG00000121542 9606 + 3:123201969-123271909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonLiverLungMuscleOvaryENST00000481965
Transcript ID Bladder Brain Colon Liver Lung Muscle Ovary
ENST00000481965 5.905±0.00 6.469±0.00 9.071±0.00 9.822±0.00 4.686±0.00 2.572±0.00 8.280±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0001 VISTA 3:122671455-123276444
CIL_000074 CIL_000074_0002 CGP 3:122909193-123225227
CIL_000073 CIL_000073_0002 CGP 3:123067062-123274130
CIL_00007A CIL_00007A_0002 CGP 3:123201927-123449758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006810 IEA transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043521 Sec22a-001 protein_coding Mus_musculus 0 460
ENSMUST00000154064 Sec22a-005 processed_transcript Mus_musculus 0 394
ENSMUST00000141087 Sec22a-004 processed_transcript Mus_musculus 0 270
ENSMUST00000138355 Sec22a-002 retained_intron Mus_musculus 0 265
ENSMUST00000154216 Sec22a-003 retained_intron Mus_musculus 0 250

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