C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121892 PDS5A 9606 - 4:39822863-39977956 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303538 PDS5A-001 39822863-39977956 protein_coding
  ENST00000503396 PDS5A-003 39898014-39977956 protein_coding
  ENST00000503696 PDS5A-011 39872792-39874400 retained_intron
  ENST00000503867 PDS5A-008 39904042-39908884 retained_intron
  ENST00000506262 PDS5A-005 39976113-39977510 retained_intron
  ENST00000507020 PDS5A-009 39862986-39874408 nonsense_mediated_decay
  ENST00000507766 PDS5A-004 39837012-39848561 retained_intron
  ENST00000508625 PDS5A-010 39910065-39913687 retained_intron
  ENST00000512643 PDS5A-007 39900455-39913726 nonsense_mediated_decay
  ENST00000513798 PDS5A-006 39900426-39928106 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303538ENST00000503396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303538 6.118±0.00 3.071±0.00 5.415±0.00 2.355±1.76 8.567±1.68 8.393±2.81 4.937±1.64 8.860±1.85 6.676±3.31 6.755±0.25 6.877±0.00 8.807±3.55 4.226±0.53 4.439±2.51
ENST00000503396 N/A N/A N/A 2.319±0.00 N/A N/A N/A N/A N/A N/A 1.690±0.00 N/A N/A 2.523±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TZ CIL_0002TZ_0002 CGP 4:39698044-39977956
CIL_0002TY CIL_0002TY_0002 CGP 4:39822863-40158252

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0007064 IPI mitotic sister chromatid cohesion
GO:0008156 IMP negative regulation of DNA replication

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055022 pds5a PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000029202 Pds5a PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) protein_coding Mus_musculus

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