C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002TZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000013505-ENSDARG00000055022 CGP 7955 1:22085711-22144623
GeneTranscriptPositionBiotype
ENSDARG00000013505 (ube2kb)
ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) 		ENSDART00000025770 (ube2kb-201) 22085997-22096682 protein_coding
ENSDART00000139003 (ube2kb-001) 22085711-22097063 protein_coding
CIL_0002TZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078140-ENSG00000121892 CGP 9606 4:39698044-39977956
GeneTranscriptPositionBiotype
ENSG00000078140 (UBE2K)
ubiquitin-conjugating enzyme E2K 		ENST00000261427 (UBE2K-001) 39698044-39782792 protein_coding
ENST00000438068 (UBE2K-002) 39698139-39779992 processed_transcript
ENST00000445950 (UBE2K-006) 39698176-39779983 protein_coding
ENST00000503368 (UBE2K-005) 39698163-39778710 protein_coding
ENST00000510719 (UBE2K-007) 39698328-39778633 nonsense_mediated_decay
ENST00000510934 (UBE2K-004) 39698109-39778384 protein_coding
ENST00000513231 (UBE2K-003) 39698139-39778607 processed_transcript
ENSG00000121892 (PDS5A)
PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 		ENST00000303538 (PDS5A-001) 39822863-39977956 protein_coding
ENST00000503396 (PDS5A-003) 39898014-39977956 protein_coding
ENST00000503696 (PDS5A-011) 39872792-39874400 retained_intron
ENST00000503867 (PDS5A-008) 39904042-39908884 retained_intron
ENST00000506262 (PDS5A-005) 39976113-39977510 retained_intron
ENST00000507020 (PDS5A-009) 39862986-39874408 nonsense_mediated_decay
ENST00000507766 (PDS5A-004) 39837012-39848561 retained_intron
ENST00000508625 (PDS5A-010) 39910065-39913687 retained_intron
ENST00000512643 (PDS5A-007) 39900455-39913726 nonsense_mediated_decay
ENST00000513798 (PDS5A-006) 39900426-39928106 protein_coding
ENSG00000180610 (ZBTB12P1)
zinc finger and BTB domain containing 12 pseudogene 1 		ENST00000314232 (ZBTB12P1-001) 39770081-39771371 processed_pseudogene
ENSG00000231707 (PABPC1P1)
poly(A) binding protein, cytoplasmic 1 pseudogene 1 		ENST00000506347 (PABPC1P1-001) 39973444-39974338 processed_pseudogene
ENSG00000243260 (RN7SL558P)
RNA, 7SL, cytoplasmic 558, pseudogene 		ENST00000497468 (RN7SL558P-201) 39761000-39761298 misc_RNA
ENSG00000249019 (RP11-539G18.1)
 ENST00000513977 (RP11-539G18.1-001) 39713842-39714451 processed_pseudogene
ENSG00000250568 (RP11-333E13.2)
 ENST00000510152 (RP11-333E13.2-001) 39973128-39973442 processed_pseudogene
ENSG00000252975 (Y_RNA)
Y RNA 		ENST00000517166 (Y_RNA.1-924) 39710085-39710176 misc_RNA
ENSG00000271278 (TCEB1P33)
transcription elongation factor B (SIII), polypeptide 1 pseudogene 33 		ENST00000603716 (TCEB1P33-001) 39932454-39933561 processed_pseudogene
CIL_0002TZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029203-ENSMUSG00000029202 CGP 10090 5:65537233-65697856
GeneTranscriptPositionBiotype
ENSMUSG00000029202 (Pds5a)
PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 		ENSMUST00000031104 (Pds5a-201) 65615260-65697856 protein_coding
ENSMUSG00000029203 (Ube2k)
ubiquitin-conjugating enzyme E2K 		ENSMUST00000031105 (Ube2k-004) 65537352-65595047 nonsense_mediated_decay
ENSMUST00000122141 (Ube2k-003) 65537300-65596393 protein_coding
ENSMUST00000131873 (Ube2k-002) 65537277-65595711 processed_transcript
ENSMUST00000142407 (Ube2k-001) 65537233-65598988 protein_coding
ENSMUST00000146799 (Ube2k-005) 65591596-65595145 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TZ_0001ENSDARG00000013505ENSDART00000025770ENSDART00000139003CIL_0002TZ_0002ENSG00000078140ENST00000261427ENST00000438068ENST00000445950ENST00000503368ENST00000510719ENST00000510934ENST00000513231ENSG00000121892ENST00000303538ENST00000503396ENST00000503696ENST00000503867ENST00000506262ENST00000507020ENST00000507766ENST00000508625ENST00000512643ENST00000513798ENSG00000180610ENST00000314232ENSG00000231707ENST00000506347ENSG00000243260ENST00000497468ENSG00000249019ENST00000513977ENSG00000250568ENST00000510152ENSG00000252975ENST00000517166ENSG00000271278ENST00000603716CIL_0002TZ_0003ENSMUSG00000029202ENSMUST00000031104ENSMUSG00000029203ENSMUST00000031105ENSMUST00000122141ENSMUST00000131873ENSMUST00000142407ENSMUST00000146799
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TZ_0001ENSDARG00000013505ENSDART00000025770ENSDART00000139003CIL_0002TZ_0002ENSG00000078140ENST00000261427ENST00000503368ENST00000510934ENST00000513231ENSG00000121892ENST00000303538ENST00000503396ENSG00000180610ENST00000314232ENSG00000231707ENST00000506347ENSG00000243260ENST00000497468ENSG00000249019ENST00000513977ENSG00000250568ENST00000510152ENSG00000252975ENST00000517166ENSG00000271278ENST00000603716CIL_0002TZ_0003ENSMUSG00000029202ENSMUST00000031104ENSMUSG00000029203ENSMUST00000031105ENSMUST00000122141ENSMUST00000131873ENSMUST00000142407
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013505 ENSDART00000025770 N/A N/A N/A 10.418±0.15 N/A N/A 4.188±1.94 4.783±4.32 0.791±0.00 N/A N/A N/A N/A N/A
ENSDART00000139003 N/A N/A N/A 35.319±14.92 N/A N/A 6.003±4.86 4.016±3.20 0.544±0.00 N/A 5.623±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078140 ENST00000261427 7.604±0.00 9.455±0.00 3.105±0.00 14.349±3.13 8.032±1.97 5.935±1.95 4.026±1.54 10.341±2.52 6.539±0.44 0.646±0.00 7.300±0.00 6.909±2.13 7.265±2.30 6.343±0.00
ENST00000438068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.468±0.00 N/A
ENST00000510719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510934 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.027±0.00 N/A N/A N/A 22.991±5.28
ENST00000513231 16.096±0.00 N/A N/A N/A N/A 15.160±0.00 14.531±0.00 N/A 13.861±0.00 18.032±0.00 N/A 14.806±0.00 24.890±0.00 22.122±1.25
ENSG00000121892 ENST00000303538 6.118±0.00 3.071±0.00 5.415±0.00 2.355±1.76 8.567±1.68 8.393±2.81 4.937±1.64 8.860±1.85 6.676±3.31 6.755±0.25 6.877±0.00 8.807±3.55 4.226±0.53 4.439±2.51
ENST00000503396 N/A N/A N/A 2.319±0.00 N/A N/A N/A N/A N/A N/A 1.690±0.00 N/A N/A 2.523±0.00
ENST00000503696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180610 ENST00000314232 0.423±0.00 0.150±0.00 0.224±0.00 0.118±0.00 0.332±0.14 1.008±0.00 0.069±0.00 0.161±0.00 0.549±0.00 0.238±0.13 N/A 0.406±0.22 0.149±0.08 0.203±0.16
ENSG00000231707 ENST00000506347 0.379±0.00 0.211±0.00 0.125±0.00 0.461±0.30 0.785±0.60 0.226±0.15 0.447±0.23 0.715±0.58 0.396±0.33 0.322±0.02 0.068±0.00 0.359±0.21 0.275±0.00 0.270±0.01
ENSG00000243260 ENST00000497468 0.449±0.00 0.581±0.00 N/A 0.165±0.00 5.173±0.00 1.148±0.00 0.049±0.00 1.493±0.64 0.095±0.00 1.870±1.71 N/A 0.099±0.00 0.099±0.00 0.460±0.03
ENSG00000249019 ENST00000513977 N/A N/A N/A 0.268±0.00 N/A 0.049±0.00 N/A N/A 0.189±0.00 N/A 0.047±0.00 N/A N/A N/A
ENSG00000250568 ENST00000510152 1.039±0.00 1.031±0.00 N/A 0.268±0.00 0.362±0.00 1.123±0.00 0.185±0.00 0.205±0.00 0.135±0.00 0.403±0.08 0.353±0.00 0.913±0.57 N/A 1.434±0.00
ENSG00000252975 ENST00000517166 N/A 0.432±0.00 N/A 0.639±0.00 N/A N/A 0.592±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000271278 ENST00000603716 0.282±0.00 0.470±0.00 N/A 0.207±0.00 0.176±0.00 0.082±0.00 0.062±0.00 0.360±0.31 0.216±0.14 0.059±0.02 N/A 0.133±0.07 0.082±0.00 0.097±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029202 ENSMUST00000031104 4.513±2.02 2.896±0.51 N/A 3.437±1.67 4.625±1.46 4.920±1.48 3.127±1.28 3.922±0.43 2.678±1.37 5.945±0.22 N/A 6.193±2.52 9.345±5.78 0.602±0.04
ENSMUSG00000029203 ENSMUST00000031105 9.887±0.59 3.629±0.00 19.803±0.00 47.073±0.00 9.775±3.46 N/A 6.952±1.93 10.721±1.49 9.190±2.33 N/A 11.035±1.55 29.719±16.81 60.756±32.72 260.527±0.00
ENSMUST00000122141 N/A 3.612±0.70 5.278±0.00 N/A N/A N/A N/A 4.610±2.00 4.286±1.86 N/A N/A N/A N/A N/A
ENSMUST00000131873 5.872±0.58 4.578±0.17 4.860±0.00 5.606±0.00 4.974±1.04 N/A 6.411±0.89 7.980±1.04 7.240±4.30 N/A 9.731±0.66 8.774±1.66 14.197±3.22 24.844±0.00
ENSMUST00000142407 8.882±2.04 6.829±1.46 6.393±0.77 16.807±8.13 6.972±4.02 9.670±0.72 3.107±0.40 6.792±1.25 4.828±1.24 11.949±0.24 2.609±0.26 11.908±4.81 3.346±1.77 N/A
ENSMUST00000146799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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