C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002TY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000055022-ENSDARG00000061451 CGP 7955 1:22097096-22167909
GeneTranscriptPositionBiotype
ENSDARG00000061451 (n4bp2)
NEDD4 binding protein 2 		ENSDART00000087658 (n4bp2-001) 22146588-22167909 protein_coding
ENSDART00000134113 (n4bp2-002) 22153102-22154304 retained_intron
CIL_0002TY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000121892-ENSG00000078177 CGP 9606 4:39822863-40158252
GeneTranscriptPositionBiotype
ENSG00000078177 (N4BP2)
NEDD4 binding protein 2 		ENST00000261435 (N4BP2-001) 40056826-40158252 protein_coding
ENST00000511480 (N4BP2-002) 40056913-40158251 nonsense_mediated_decay
ENST00000513269 (N4BP2-003) 40102907-40155397 protein_coding
ENST00000515550 (N4BP2-004) 40056936-40102606 protein_coding
ENSG00000121892 (PDS5A)
PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 		ENST00000303538 (PDS5A-001) 39822863-39977956 protein_coding
ENST00000503396 (PDS5A-003) 39898014-39977956 protein_coding
ENST00000503696 (PDS5A-011) 39872792-39874400 retained_intron
ENST00000503867 (PDS5A-008) 39904042-39908884 retained_intron
ENST00000506262 (PDS5A-005) 39976113-39977510 retained_intron
ENST00000507020 (PDS5A-009) 39862986-39874408 nonsense_mediated_decay
ENST00000507766 (PDS5A-004) 39837012-39848561 retained_intron
ENST00000508625 (PDS5A-010) 39910065-39913687 retained_intron
ENST00000512643 (PDS5A-007) 39900455-39913726 nonsense_mediated_decay
ENST00000513798 (PDS5A-006) 39900426-39928106 protein_coding
ENSG00000201863 (SNORA51)
Small nucleolar RNA SNORA51 		ENST00000364993 (SNORA51.1-204) 40082983-40083106 snoRNA
ENSG00000231707 (PABPC1P1)
poly(A) binding protein, cytoplasmic 1 pseudogene 1 		ENST00000506347 (PABPC1P1-001) 39973444-39974338 processed_pseudogene
ENSG00000249064 (KRT18P25)
keratin 18 pseudogene 25 		ENST00000508931 (KRT18P25-001) 40020240-40021517 processed_pseudogene
ENSG00000250568 (RP11-333E13.2)
 ENST00000510152 (RP11-333E13.2-001) 39973128-39973442 processed_pseudogene
ENSG00000271278 (TCEB1P33)
transcription elongation factor B (SIII), polypeptide 1 pseudogene 33 		ENST00000603716 (TCEB1P33-001) 39932454-39933561 processed_pseudogene
CIL_0002TY_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029202-ENSMUSG00000037795 CGP 10090 5:65615260-65830108
GeneTranscriptPositionBiotype
ENSMUSG00000029202 (Pds5a)
PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 		ENSMUST00000031104 (Pds5a-201) 65615260-65697856 protein_coding
ENSMUSG00000037795 (N4bp2)
NEDD4 binding protein 2 		ENSMUST00000087264 (N4bp2-201) 65764120-65826650 protein_coding
ENSMUST00000113738 (N4bp2-001) 65763521-65830108 protein_coding
ENSMUST00000127411 (N4bp2-005) 65809731-65815058 retained_intron
ENSMUST00000136674 (N4bp2-006) 65825242-65826874 retained_intron
ENSMUST00000137190 (N4bp2-003) 65763979-65786259 processed_transcript
ENSMUST00000138239 (N4bp2-002) 65764120-65817284 protein_coding
ENSMUST00000138607 (N4bp2-004) 65763979-65775894 retained_intron
ENSMUSG00000072918 (N4bp2os)
NEDD4 binding protein 2, opposite strand 		ENSMUST00000131859 (N4bp2os-002) 65760991-65763866 antisense
ENSMUST00000156943 (N4bp2os-001) 65761445-65763357 antisense
ENSMUSG00000089337 (Gm24346)
predicted gene, 24346 		ENSMUST00000158712 (Gm24346-201) 65777014-65777207 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TY_0001ENSDARG00000061451ENSDART00000087658ENSDART00000134113CIL_0002TY_0002ENSG00000078177ENST00000261435ENST00000511480ENST00000513269ENST00000515550ENSG00000121892ENST00000303538ENST00000503396ENST00000503696ENST00000503867ENST00000506262ENST00000507020ENST00000507766ENST00000508625ENST00000512643ENST00000513798ENSG00000201863ENST00000364993ENSG00000231707ENST00000506347ENSG00000249064ENST00000508931ENSG00000250568ENST00000510152ENSG00000271278ENST00000603716CIL_0002TY_0003ENSMUSG00000029202ENSMUST00000031104ENSMUSG00000037795ENSMUST00000087264ENSMUST00000113738ENSMUST00000127411ENSMUST00000136674ENSMUST00000137190ENSMUST00000138239ENSMUST00000138607ENSMUSG00000072918ENSMUST00000131859ENSMUST00000156943ENSMUSG00000089337ENSMUST00000158712
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TY_0001ENSDARG00000061451ENSDART00000087658CIL_0002TY_0002ENSG00000078177ENST00000261435ENST00000511480ENST00000513269ENSG00000121892ENST00000303538ENST00000503396ENSG00000201863ENST00000364993ENSG00000231707ENST00000506347ENSG00000249064ENST00000508931ENSG00000250568ENST00000510152ENSG00000271278ENST00000603716CIL_0002TY_0003ENSMUSG00000029202ENSMUST00000031104ENSMUSG00000037795ENSMUST00000087264ENSMUST00000113738ENSMUST00000138239ENSMUST00000138607ENSMUSG00000072918ENSMUST00000131859ENSMUST00000156943ENSMUSG00000089337ENSMUST00000158712
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061451 ENSDART00000087658 N/A N/A N/A 1.886±1.05 N/A N/A 2.029±0.80 1.808±1.41 0.299±0.00 N/A 0.878±0.00 N/A N/A N/A
ENSDART00000134113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078177 ENST00000261435 0.274±0.00 0.158±0.00 N/A 0.048±0.00 0.505±0.05 1.292±0.00 0.291±0.01 0.796±0.72 0.495±0.38 2.066±0.00 0.390±0.00 0.569±0.29 0.593±0.51 0.812±0.00
ENST00000511480 N/A N/A N/A 0.384±0.00 0.603±0.00 0.508±0.00 N/A N/A N/A N/A N/A 0.217±0.13 0.448±0.00 0.364±0.00
ENST00000513269 N/A N/A 0.393±0.00 0.087±0.00 0.775±0.00 0.845±0.00 N/A 2.444±0.00 N/A N/A N/A 0.501±0.22 0.688±0.00 1.302±0.00
ENST00000515550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000121892 ENST00000303538 6.118±0.00 3.071±0.00 5.415±0.00 2.355±1.76 8.567±1.68 8.393±2.81 4.937±1.64 8.860±1.85 6.676±3.31 6.755±0.25 6.877±0.00 8.807±3.55 4.226±0.53 4.439±2.51
ENST00000503396 N/A N/A N/A 2.319±0.00 N/A N/A N/A N/A N/A N/A 1.690±0.00 N/A N/A 2.523±0.00
ENST00000503696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201863 ENST00000364993 N/A N/A N/A 0.176±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A
ENSG00000231707 ENST00000506347 0.379±0.00 0.211±0.00 0.125±0.00 0.461±0.30 0.785±0.60 0.226±0.15 0.447±0.23 0.715±0.58 0.396±0.33 0.322±0.02 0.068±0.00 0.359±0.21 0.275±0.00 0.270±0.01
ENSG00000249064 ENST00000508931 0.071±0.00 0.016±0.00 N/A N/A 0.034±0.00 0.015±0.00 N/A 0.016±0.00 N/A 0.049±0.03 N/A 0.034±0.00 0.036±0.01 0.043±0.03
ENSG00000250568 ENST00000510152 1.039±0.00 1.031±0.00 N/A 0.268±0.00 0.362±0.00 1.123±0.00 0.185±0.00 0.205±0.00 0.135±0.00 0.403±0.08 0.353±0.00 0.913±0.57 N/A 1.434±0.00
ENSG00000271278 ENST00000603716 0.282±0.00 0.470±0.00 N/A 0.207±0.00 0.176±0.00 0.082±0.00 0.062±0.00 0.360±0.31 0.216±0.14 0.059±0.02 N/A 0.133±0.07 0.082±0.00 0.097±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029202 ENSMUST00000031104 4.513±2.02 2.896±0.51 N/A 3.437±1.67 4.625±1.46 4.920±1.48 3.127±1.28 3.922±0.43 2.678±1.37 5.945±0.22 N/A 6.193±2.52 9.345±5.78 0.602±0.04
ENSMUSG00000037795 ENSMUST00000087264 N/A N/A 1.263±0.00 N/A N/A N/A N/A N/A N/A N/A 0.162±0.00 1.523±0.22 N/A 2.538±1.63
ENSMUST00000113738 0.200±0.00 1.820±0.26 0.359±0.00 5.236±4.34 1.494±0.66 1.275±0.19 0.354±0.19 1.768±0.21 3.292±1.78 1.154±0.46 0.168±0.00 2.238±0.66 6.971±3.94 2.096±0.76
ENSMUST00000127411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138239 N/A N/A N/A 2.061±0.00 N/A N/A N/A 0.469±0.00 N/A 0.821±0.00 0.187±0.00 2.474±0.00 11.806±0.00 1.038±0.00
ENSMUST00000138607 N/A N/A N/A N/A 3.211±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000072918 ENSMUST00000131859 0.257±0.00 N/A 0.083±0.00 0.195±0.02 N/A N/A 0.081±0.03 N/A 0.050±0.03 N/A N/A N/A 0.185±0.10 0.661±0.00
ENSMUST00000156943 N/A N/A 0.147±0.00 N/A N/A N/A 1.769±0.00 N/A N/A N/A N/A N/A 1.469±0.00 4.778±2.88
ENSMUSG00000089337 ENSMUST00000158712 N/A N/A 0.631±0.00 0.458±0.04 N/A 3.253±0.06 N/A N/A 1.039±0.60 N/A N/A 21.993±20.24 2.145±1.32 2.677±0.00

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