C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122512 PMS2 9606 - 7:5973239-6009125 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265849 PMS2-001 5973239-6009125 protein_coding
  ENST00000380416 PMS2-007 6001966-6009098 retained_intron
  ENST00000382321 PMS2-006 5973399-6009019 protein_coding
  ENST00000406569 PMS2-005 5977674-6009019 processed_transcript
  ENST00000415839 PMS2-002 6003310-6006066 retained_intron
  ENST00000441476 PMS2-201 5973242-6009106 protein_coding
  ENST00000469652 PMS2-004 5982875-6009019 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265849ENST00000380416ENST00000382321ENST00000406569ENST00000415839ENST00000441476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265849 N/A N/A 1.411±0.00 2.542±0.00 0.362±0.00 N/A 0.399±0.02 2.251±0.00 0.650±0.27 0.808±0.00 N/A 1.109±1.01 0.970±0.22 1.518±0.28
ENST00000380416 N/A 0.955±0.00 N/A N/A N/A N/A 0.296±0.00 N/A 0.379±0.00 0.349±0.00 N/A 2.477±0.00 N/A N/A
ENST00000382321 N/A N/A 1.021±0.00 N/A N/A 0.952±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406569 1.165±0.00 1.330±0.00 N/A 2.569±1.05 1.533±0.33 0.673±0.00 0.467±0.00 0.918±0.00 0.881±0.54 0.171±0.00 0.774±0.56 1.425±0.08 0.533±0.14 1.235±0.00
ENST00000415839 N/A N/A 1.694±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441476 0.610±0.00 1.559±0.00 N/A 2.744±0.00 1.490±0.00 0.606±0.00 0.226±0.09 1.343±0.00 N/A 0.349±0.00 0.703±0.00 1.862±1.45 1.441±0.00 1.566±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0004519 IEA endonuclease activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006200 IBA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0006298 IDA:IEA mismatch repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0015630 IDA microtubule cytoskeleton
GO:0016446 IBA somatic hypermutation of immunoglobulin genes
GO:0016447 IEA somatic recombination of immunoglobulin gene segments
GO:0016887 IBA ATPase activity
GO:0030983 IEA mismatched DNA binding
GO:0032138 IDA single base insertion or deletion binding
GO:0032300 IEA mismatch repair complex
GO:0032389 IBA MutLalpha complex
GO:0032407 IDA MutSalpha complex binding
GO:0042493 IEA response to drug
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075672 pms2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000079109 Pms2 postmeiotic segregation increased 2 (S. cerevisiae) protein_coding Mus_musculus

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