C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: postmeiotic segregation increased 2 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079109 Pms2 10090 + 5:143909964-143937309 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110707 Pms2-005 143909990-143931442 processed_transcript
  ENSMUST00000110709 Pms2-014 143910057-143931159 protein_coding
  ENSMUST00000110710 Pms2-002 143909990-143931205 processed_transcript
  ENSMUST00000126331 Pms2-004 143910025-143926870 retained_intron
  ENSMUST00000128153 Pms2-008 143910161-143913460 processed_transcript
  ENSMUST00000128207 Pms2-010 143913318-143913912 retained_intron
  ENSMUST00000141942 Pms2-007 143909964-143933968 retained_intron
  ENSMUST00000147910 Pms2-009 143909999-143917658 processed_transcript
  ENSMUST00000148011 Pms2-001 143909964-143933968 protein_coding
  ENSMUST00000154781 Pms2-006 143910025-143914291 retained_intron
  ENSMUST00000164999 Pms2-013 143919579-143925479 protein_coding
  ENSMUST00000168085 Pms2-012 143910004-143914754 processed_transcript
  ENSMUST00000170083 Pms2-003 143909964-143933968 processed_transcript
  ENSMUST00000172367 Pms2-011 143928175-143937309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000110707ENSMUST00000110709ENSMUST00000110710ENSMUST00000126331ENSMUST00000141942ENSMUST00000147910ENSMUST00000148011ENSMUST00000164999ENSMUST00000170083
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000110707 1.047±0.52 0.513±0.18 0.939±0.03 1.961±0.28 0.931±0.31 0.957±0.25 0.443±0.01 0.907±0.28 1.688±1.44 1.410±0.17 0.542±0.19 1.581±0.53 3.036±0.90
ENSMUST00000110709 N/A 0.821±0.00 N/A N/A N/A N/A N/A 0.732±0.00 0.367±0.15 N/A N/A 1.370±0.00 3.192±0.00
ENSMUST00000110710 0.926±0.33 0.562±0.00 0.981±0.22 2.262±0.42 0.915±0.19 0.682±0.18 0.568±0.17 N/A 1.021±0.65 1.362±0.00 0.591±0.07 1.433±0.51 1.288±0.00
ENSMUST00000126331 N/A 0.314±0.05 N/A N/A 0.710±0.37 N/A N/A N/A 0.075±0.00 N/A N/A 0.889±0.36 1.403±0.32
ENSMUST00000141942 0.551±0.29 0.444±0.15 0.417±0.06 0.923±0.16 0.438±0.06 0.318±0.00 0.230±0.05 0.238±0.09 0.782±0.60 0.535±0.05 0.179±0.01 0.779±0.32 0.812±0.27
ENSMUST00000147910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.352±0.00 N/A N/A
ENSMUST00000148011 0.319±0.00 N/A 0.699±0.07 0.933±0.08 0.196±0.00 0.380±0.07 0.203±0.00 0.563±0.08 0.833±0.48 N/A 0.311±0.08 0.722±0.00 N/A
ENSMUST00000164999 N/A N/A N/A N/A N/A N/A N/A N/A 0.956±0.00 N/A N/A N/A N/A
ENSMUST00000170083 N/A N/A N/A 1.001±0.00 N/A N/A N/A N/A 0.083±0.00 N/A 0.154±0.00 N/A 0.332±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AY CIL_0005AY_0002 CGP 5:143909964-143985719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003697 IBA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IBA ATP catabolic process
GO:0006281 IMP DNA repair
GO:0006298 IMP mismatch repair
GO:0006974 IGI cellular response to DNA damage stimulus
GO:0007126 TAS meiotic nuclear division
GO:0015630 IEA microtubule cytoskeleton
GO:0016446 IMP somatic hypermutation of immunoglobulin genes
GO:0016447 IMP somatic recombination of immunoglobulin gene segments
GO:0016887 IBA ATPase activity
GO:0030983 IEA mismatched DNA binding
GO:0032138 IEA single base insertion or deletion binding
GO:0032389 IDA MutLalpha complex
GO:0032407 IEA MutSalpha complex binding
GO:0042493 IEA response to drug

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075672 pms2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) protein_coding Danio_rerio
ENSG00000122512 PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) protein_coding Homo_sapiens

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