C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265849 PMS2-001 ENSG00000122512 9606 - 7:5973239-6009125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000265849
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000265849 1.411±0.00 2.542±0.00 0.362±0.00 0.399±0.02 2.251±0.00 0.650±0.27 0.808±0.00 1.109±1.01 0.970±0.22 1.518±0.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0004519 IEA endonuclease activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006200 IBA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0006298 IDA:IEA mismatch repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0015630 IDA microtubule cytoskeleton
GO:0016446 IBA somatic hypermutation of immunoglobulin genes
GO:0016447 IEA somatic recombination of immunoglobulin gene segments
GO:0016887 IBA ATPase activity
GO:0030983 IEA mismatched DNA binding
GO:0032138 IDA single base insertion or deletion binding
GO:0032389 IBA MutLalpha complex
GO:0032407 IDA MutSalpha complex binding
GO:0042493 IEA response to drug
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126331 Pms2-004 retained_intron Mus_musculus 0 1303
ENSMUST00000141942 Pms2-007 retained_intron Mus_musculus 0 1303
ENSMUST00000148011 Pms2-001 protein_coding Mus_musculus 0 1303
ENSMUST00000110707 Pms2-005 processed_transcript Mus_musculus 0 1280
ENSMUST00000170083 Pms2-003 processed_transcript Mus_musculus 0 1280
ENSMUST00000110710 Pms2-002 processed_transcript Mus_musculus 0 1277
ENSMUST00000110709 Pms2-014 protein_coding Mus_musculus 0 894
ENSMUST00000147910 Pms2-009 processed_transcript Mus_musculus 0 732
ENSMUST00000154781 Pms2-006 retained_intron Mus_musculus 0 449
ENSMUST00000168085 Pms2-012 processed_transcript Mus_musculus 0 407
ENSMUST00000128207 Pms2-010 retained_intron Mus_musculus 0 276

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