C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HERPUD family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122557 HERPUD2 9606 - 7:35632659-35695571 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311350 HERPUD2-002 35633069-35695135 protein_coding
  ENST00000396081 HERPUD2-001 35632659-35695135 protein_coding
  ENST00000413517 HERPUD2-006 35635426-35694566 protein_coding
  ENST00000426180 HERPUD2-007 35634312-35668579 processed_transcript
  ENST00000427455 HERPUD2-003 35667554-35695023 protein_coding
  ENST00000438224 HERPUD2-005 35635344-35694601 protein_coding
  ENST00000603731 HERPUD2-008 35694275-35695571 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311350ENST00000396081ENST00000426180ENST00000427455
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311350 N/A 1.886±0.00 N/A 3.760±0.00 3.548±0.00 2.168±0.00 1.096±0.00 3.007±0.00 2.697±0.00 N/A 2.034±0.00 5.523±3.87 4.155±4.07 14.198±9.41
ENST00000396081 9.821±0.00 3.803±0.00 1.338±0.00 4.494±2.73 2.466±1.51 3.715±0.00 2.206±1.87 3.294±2.04 2.846±0.72 4.486±0.00 4.871±0.00 6.862±3.59 2.244±0.77 6.224±0.00
ENST00000426180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00 N/A N/A N/A
ENST00000427455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.113±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SR CIL_0008SR_0001 VISTA 7:35048704-35649425
CIL_0009CB CIL_0009CB_0001 VISTA 7:35073081-35676867
CIL_00084T CIL_00084T_0001 VISTA 7:35073115-35676739
CIL_00091N CIL_00091N_0001 VISTA 7:35115190-35716608
CIL_0008SX CIL_0008SX_0001 VISTA 7:35118941-35719912
CIL_00091M CIL_00091M_0001 VISTA 7:35165574-35766732
CIL_00091L CIL_00091L_0001 VISTA 7:35251004-35852019
CIL_0005M2 CIL_0005M2_0001 CGP 7:35632659-35907105

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006986 IEA response to unfolded protein
GO:0007283 IEA spermatogenesis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021033 herpud2 HERPUD family member 2 protein_coding Danio_rerio
ENSMUSG00000008429 Herpud2 HERPUD family member 2 protein_coding Mus_musculus

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