C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005M2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122557-ENSG00000122545 CGP 9606 7:35632659-35907105
GeneTranscriptPositionBiotype
ENSG00000122557 (HERPUD2)
HERPUD family member 2 		ENST00000311350 (HERPUD2-002) 35633069-35695135 protein_coding
ENST00000396081 (HERPUD2-001) 35632659-35695135 protein_coding
ENST00000413517 (HERPUD2-006) 35635426-35694566 protein_coding
ENST00000426180 (HERPUD2-007) 35634312-35668579 processed_transcript
ENST00000427455 (HERPUD2-003) 35667554-35695023 protein_coding
ENST00000438224 (HERPUD2-005) 35635344-35694601 protein_coding
ENST00000603731 (HERPUD2-008) 35694275-35695571 protein_coding
ENSG00000227544 (AC018647.3)
 ENST00000430518 (AC018647.3-004) 35716490-35719534 lincRNA
ENST00000432866 (AC018647.3-003) 35715034-35719695 lincRNA
ENST00000449644 (AC018647.3-001) 35716474-35734887 lincRNA
ENST00000458087 (AC018647.3-002) 35716486-35719712 lincRNA
ENST00000585952 (AC018647.3-005) 35716802-35734515 lincRNA
ENSG00000228878 (SEPT7-AS1)
SEPT7 antisense RNA 1 (head to head) 		ENST00000412856 (SEPT7-AS1-001) 35755146-35800588 lincRNA
ENST00000424194 (SEPT7-AS1-003) 35763764-35800616 lincRNA
ENST00000437235 (SEPT7-AS1-002) 35751856-35800606 lincRNA
ENSG00000232736 (AC007551.2)
 ENST00000457394 (AC007551.2-001) 35768122-35768640 processed_pseudogene
ENSG00000271122 (RP11-379H18.1)
 ENST00000605778 (RP11-379H18.1-001) 35695214-35699413 antisense
ENSG00000274328 (RP11-239C9.1)
 ENST00000613889 (RP11-239C9.1-001) 35847038-35847426 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005M2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008429-ENSMUSG00000001833 CGP 10090 9:25108130-25308571
GeneTranscriptPositionBiotype
ENSMUSG00000001833 (Sept7)
septin 7 		ENSMUST00000115272 (Sept7-201) 25252439-25308571 protein_coding
ENSMUST00000165594 (Sept7-202) 25252439-25308571 protein_coding
ENSMUSG00000008429 (Herpud2)
HERPUD family member 2 		ENSMUST00000008573 (Herpud2-201) 25108130-25151781 protein_coding
ENSMUSG00000100002 (RP23-308G10.2)
predicted gene 29642 		ENSMUST00000186170 (RP23-308G10.2-001) 25152114-25175039 lincRNA
ENSMUSG00000100824 (RP23-308G10.1)
predicted gene 29375 		ENSMUST00000185935 (RP23-308G10.1-001) 25175151-25175597 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005M2_0001ENSG00000122557ENST00000311350ENST00000396081ENST00000413517ENST00000426180ENST00000427455ENST00000438224ENST00000603731ENSG00000227544ENST00000430518ENST00000432866ENST00000449644ENST00000458087ENST00000585952ENSG00000228878ENST00000412856ENST00000424194ENST00000437235ENSG00000232736ENST00000457394ENSG00000271122ENST00000605778ENSG00000274328ENST00000613889CIL_0005M2_0002ENSMUSG00000001833ENSMUST00000115272ENSMUST00000165594ENSMUSG00000008429ENSMUST00000008573ENSMUSG00000100002ENSMUST00000186170ENSMUSG00000100824ENSMUST00000185935
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005M2_0001ENSG00000122557ENST00000311350ENST00000396081ENST00000426180ENST00000427455ENSG00000227544ENST00000430518ENST00000432866ENST00000449644ENST00000458087ENST00000585952ENSG00000228878ENST00000412856ENST00000424194ENST00000437235ENSG00000232736ENST00000457394ENSG00000271122ENST00000605778ENSG00000274328ENST00000613889CIL_0005M2_0002ENSMUSG00000001833ENSMUST00000115272ENSMUST00000165594ENSMUSG00000008429ENSMUST00000008573ENSMUSG00000100002ENSMUST00000186170ENSMUSG00000100824ENSMUST00000185935
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122557 ENST00000311350 N/A 1.886±0.00 N/A 3.760±0.00 3.548±0.00 2.168±0.00 1.096±0.00 3.007±0.00 2.697±0.00 N/A 2.034±0.00 5.523±3.87 4.155±4.07 14.198±9.41
ENST00000396081 9.821±0.00 3.803±0.00 1.338±0.00 4.494±2.73 2.466±1.51 3.715±0.00 2.206±1.87 3.294±2.04 2.846±0.72 4.486±0.00 4.871±0.00 6.862±3.59 2.244±0.77 6.224±0.00
ENST00000413517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00 N/A N/A N/A
ENST00000427455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.113±0.00 N/A N/A N/A
ENST00000438224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227544 ENST00000430518 0.043±0.00 N/A N/A 3.937±2.66 0.118±0.00 0.263±0.20 1.033±0.00 0.061±0.00 0.194±0.00 0.498±0.07 0.103±0.02 0.171±0.06 0.267±0.00 0.281±0.00
ENST00000432866 N/A N/A N/A N/A N/A 0.089±0.00 N/A 0.156±0.00 0.036±0.00 0.032±0.00 N/A 0.212±0.00 N/A N/A
ENST00000449644 N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458087 N/A N/A N/A 3.306±0.28 N/A N/A 0.322±0.15 N/A N/A 0.212±0.00 N/A 0.196±0.00 0.332±0.17 0.606±0.17
ENST00000585952 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A
ENSG00000228878 ENST00000412856 N/A N/A N/A N/A N/A N/A N/A 0.586±0.00 N/A N/A N/A 0.267±0.18 0.333±0.00 0.790±0.00
ENST00000424194 N/A N/A N/A N/A 0.577±0.00 N/A N/A N/A 0.064±0.00 N/A 0.886±0.00 N/A 0.240±0.00 N/A
ENST00000437235 N/A N/A 0.237±0.00 N/A 0.185±0.02 0.154±0.02 0.037±0.00 0.213±0.00 0.190±0.14 0.120±0.00 N/A 0.107±0.06 0.062±0.02 0.423±0.00
ENSG00000232736 ENST00000457394 N/A N/A N/A N/A 0.025±0.00 N/A N/A 0.025±0.00 N/A N/A 0.023±0.00 0.082±0.00 N/A 0.076±0.00
ENSG00000271122 ENST00000605778 1.982±0.00 1.397±0.00 1.096±0.00 1.965±0.00 1.344±0.00 0.890±0.00 1.133±0.99 2.350±0.00 0.984±0.00 0.545±0.00 N/A 1.407±0.65 1.930±0.35 2.316±0.20
ENSG00000274328 ENST00000613889 N/A 0.061±0.00 1.122±0.00 0.141±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001833 ENSMUST00000115272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.431±0.00
ENSMUST00000165594 14.566±1.36 2.864±1.45 48.803±1.22 35.507±1.63 9.478±1.63 5.080±0.54 13.208±0.85 7.253±1.46 16.638±12.73 18.028±3.72 19.247±1.07 18.131±23.98 48.822±7.57 7.624±3.55
ENSMUSG00000008429 ENSMUST00000008573 17.681±1.17 44.403±6.13 17.726±0.11 10.485±2.69 19.853±8.97 16.978±1.69 9.464±3.43 13.211±2.39 8.592±1.41 25.735±4.40 13.715±0.69 32.163±9.45 12.018±3.21 59.112±21.28
ENSMUSG00000100002 ENSMUST00000186170 0.265±0.14 N/A 0.083±0.05 0.060±0.03 0.185±0.00 N/A N/A 0.410±0.21 0.252±0.15 N/A N/A 0.169±0.00 0.424±0.19 0.666±0.07
ENSMUSG00000100824 ENSMUST00000185935 N/A N/A 0.121±0.10 0.108±0.01 N/A N/A 0.172±0.05 0.116±0.00 0.110±0.08 N/A 0.252±0.00 0.137±0.02 0.224±0.21 0.252±0.16

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