C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HERPUD family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396081 HERPUD2-001 ENSG00000122557 9606 - 7:35632659-35695135 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396081
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396081 9.821±0.00 3.803±0.00 1.338±0.00 4.494±2.73 2.466±1.51 3.715±0.00 2.206±1.87 3.294±2.04 2.846±0.72 4.486±0.00 4.871±0.00 6.862±3.59 2.244±0.77 6.224±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SR CIL_0008SR_0001 VISTA 7:35048704-35649425
CIL_0009CB CIL_0009CB_0001 VISTA 7:35073081-35676867
CIL_00084T CIL_00084T_0001 VISTA 7:35073115-35676739
CIL_00091N CIL_00091N_0001 VISTA 7:35115190-35716608
CIL_0008SX CIL_0008SX_0001 VISTA 7:35118941-35719912
CIL_00091M CIL_00091M_0001 VISTA 7:35165574-35766732
CIL_00091L CIL_00091L_0001 VISTA 7:35251004-35852019
CIL_0005M2 CIL_0005M2_0001 CGP 7:35632659-35907105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006986 IEA response to unfolded protein
GO:0007283 IEA spermatogenesis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008573 Herpud2-201 protein_coding Mus_musculus 0 1951

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