C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008SR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs474 VISTA 9606 7:35048704-35649425
GeneTranscriptPositionBiotype
ENSG00000122557 (HERPUD2)
HERPUD family member 2 		ENST00000311350 (HERPUD2-002) 35633069-35695135 protein_coding
ENST00000396081 (HERPUD2-001) 35632659-35695135 protein_coding
ENST00000413517 (HERPUD2-006) 35635426-35694566 protein_coding
ENST00000426180 (HERPUD2-007) 35634312-35668579 processed_transcript
ENST00000427455 (HERPUD2-003) 35667554-35695023 protein_coding
ENST00000438224 (HERPUD2-005) 35635344-35694601 protein_coding
ENST00000603731 (HERPUD2-008) 35694275-35695571 protein_coding
ENSG00000164532 (TBX20)
T-box 20 		ENST00000408931 (TBX20-001) 35202430-35254147 protein_coding
ENST00000492961 (TBX20-002) 35231500-35253631 retained_intron
ENSG00000189212 (DPY19L2P1)
DPY19L2 pseudogene 1 		ENST00000436258 (DPY19L2P1-002) 35089844-35107734 processed_transcript
ENST00000454445 (DPY19L2P1-001) 35081593-35186041 transcribed_unprocessed_pseudogene
ENST00000458672 (DPY19L2P1-003) 35079989-35162075 processed_transcript
ENSG00000226063 (AC009531.2)
 ENST00000442323 (AC009531.2-001) 35258381-35259729 lincRNA
ENSG00000236592 (S100A11P2)
S100 calcium binding protein A11 pseudogene 2 		ENST00000467589 (S100A11P2-001) 35169224-35169535 processed_pseudogene
CIL_0008SR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs474 VISTA 10090 9:24560616-25161316
GeneTranscriptPositionBiotype
ENSMUSG00000008429 (Herpud2)
HERPUD family member 2 		ENSMUST00000008573 (Herpud2-201) 25108130-25151781 protein_coding
ENSMUSG00000031965 (Tbx20)
T-box 20 		ENSMUST00000052946 (Tbx20-201) 24720812-24774303 protein_coding
ENSMUST00000166018 (Tbx20-202) 24740256-24774303 protein_coding
ENSMUSG00000047995 (Cypt4)
cysteine-rich perinuclear theca 4 		ENSMUST00000053956 (Cypt4-201) 24625185-24625827 protein_coding
ENSMUSG00000066810 (Gm10181)
predicted gene 10181 		ENSMUST00000086238 (Gm10181-201) 25089422-25089490 protein_coding
ENSMUSG00000085576 (Dpy19l2)
dpy-19-like 2 (C. elegans) 		ENSMUST00000133010 (Dpy19l2-201) 24557048-24696293 protein_coding
ENSMUSG00000100002 (RP23-308G10.2)
predicted gene 29642 		ENSMUST00000186170 (RP23-308G10.2-001) 25152114-25175039 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SR_0001ENSG00000122557ENST00000311350ENST00000396081ENST00000413517ENST00000426180ENST00000427455ENST00000438224ENST00000603731ENSG00000164532ENST00000408931ENST00000492961ENSG00000189212ENST00000436258ENST00000454445ENST00000458672ENSG00000226063ENST00000442323ENSG00000236592ENST00000467589CIL_0008SR_0002ENSMUSG00000008429ENSMUST00000008573ENSMUSG00000031965ENSMUST00000052946ENSMUST00000166018ENSMUSG00000047995ENSMUST00000053956ENSMUSG00000066810ENSMUST00000086238ENSMUSG00000085576ENSMUST00000133010ENSMUSG00000100002ENSMUST00000186170
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SR_0001ENSG00000122557ENST00000311350ENST00000396081ENST00000426180ENST00000427455ENSG00000164532ENST00000408931ENST00000492961ENSG00000189212ENST00000436258ENST00000454445ENST00000458672ENSG00000226063ENST00000442323ENSG00000236592ENST00000467589CIL_0008SR_0002ENSMUSG00000008429ENSMUST00000008573ENSMUSG00000031965ENSMUST00000052946ENSMUST00000166018ENSMUSG00000047995ENSMUST00000053956ENSMUSG00000066810ENSMUST00000086238ENSMUSG00000085576ENSMUST00000133010ENSMUSG00000100002ENSMUST00000186170
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122557 ENST00000311350 N/A 1.886±0.00 N/A 3.760±0.00 3.548±0.00 2.168±0.00 1.096±0.00 3.007±0.00 2.697±0.00 N/A 2.034±0.00 5.523±3.87 4.155±4.07 14.198±9.41
ENST00000396081 9.821±0.00 3.803±0.00 1.338±0.00 4.494±2.73 2.466±1.51 3.715±0.00 2.206±1.87 3.294±2.04 2.846±0.72 4.486±0.00 4.871±0.00 6.862±3.59 2.244±0.77 6.224±0.00
ENST00000413517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00 N/A N/A N/A
ENST00000427455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.113±0.00 N/A N/A N/A
ENST00000438224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164532 ENST00000408931 N/A N/A N/A N/A N/A N/A 3.811±1.42 N/A 0.024±0.00 N/A N/A N/A 0.429±0.30 0.319±0.08
ENST00000492961 N/A N/A N/A N/A N/A N/A 1.702±0.00 N/A 0.658±0.65 0.270±0.00 N/A N/A 0.280±0.13 N/A
ENSG00000189212 ENST00000436258 0.149±0.00 0.226±0.00 1.658±0.00 0.976±0.63 0.364±0.00 0.355±0.27 4.050±1.26 0.359±0.27 1.122±0.00 0.161±0.13 0.149±0.13 0.723±0.66 0.086±0.02 2.493±1.89
ENST00000454445 N/A N/A N/A 0.135±0.00 N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A 0.031±0.00 2.069±0.00
ENST00000458672 N/A N/A N/A 0.103±0.00 N/A 0.019±0.00 1.244±0.00 N/A N/A N/A N/A N/A 0.085±0.00 3.976±3.12
ENSG00000226063 ENST00000442323 N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A N/A N/A N/A N/A 0.131±0.00 N/A
ENSG00000236592 ENST00000467589 N/A N/A N/A 0.235±0.00 N/A N/A 0.816±0.00 0.335±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008429 ENSMUST00000008573 17.681±1.17 44.403±6.13 17.726±0.11 10.485±2.69 19.853±8.97 16.978±1.69 9.464±3.43 13.211±2.39 8.592±1.41 25.735±4.40 13.715±0.69 32.163±9.45 12.018±3.21 59.112±21.28
ENSMUSG00000031965 ENSMUST00000052946 0.016±0.00 5.019±0.48 6.144±0.05 0.276±0.15 0.006±0.00 N/A 19.635±1.34 0.029±0.02 0.570±0.07 1.141±0.27 0.011±0.00 0.024±0.02 2.120±1.81 0.011±0.01
ENSMUST00000166018 N/A N/A N/A N/A N/A N/A N/A 0.025±0.02 N/A N/A N/A 0.011±0.00 N/A N/A
ENSMUSG00000047995 ENSMUST00000053956 N/A N/A N/A 0.058±0.00 N/A N/A 0.069±0.00 0.076±0.00 N/A N/A N/A N/A 0.010±0.00 247.023±9.32
ENSMUSG00000066810 ENSMUST00000086238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1034.260±0.00 N/A 237294.000±0.00
ENSMUSG00000085576 ENSMUST00000133010 N/A N/A 0.258±0.06 0.081±0.04 0.017±0.00 N/A 0.019±0.01 0.019±0.01 0.019±0.01 0.099±0.03 N/A 0.092±0.07 0.052±0.04 39.940±13.47
ENSMUSG00000100002 ENSMUST00000186170 0.265±0.14 N/A 0.083±0.05 0.060±0.03 0.185±0.00 N/A N/A 0.410±0.21 0.252±0.15 N/A N/A 0.169±0.00 0.424±0.19 0.666±0.07

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