C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122592 HOXA7 9606 - 7:27153716-27157936 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000242159 HOXA7-001 27153716-27156677 protein_coding
  ENST00000519842 HOXA7-002 27156454-27157936 protein_coding
  ENST00000523796 HOXA7-003 27154783-27155998 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000242159ENST00000523796
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000242159 5.756±0.00 8.498±0.00 3.208±0.00 5.939±4.67 6.102±0.00 12.808±0.00 4.127±0.00 6.195±0.00 1.608±0.69 0.529±0.22 6.373±0.00
ENST00000523796 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.038±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003P9 CIL_0003P9_0001 CGP 7:27145396-27157936
CIL_0003PA CIL_0003PA_0001 CGP 7:27153716-27175180

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001525 IEP angiogenesis
GO:0001953 IDA negative regulation of cell-matrix adhesion
GO:0002686 IDA negative regulation of leukocyte migration
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IDA sequence-specific DNA binding
GO:0045617 IDA negative regulation of keratinocyte differentiation
GO:0045656 IDA negative regulation of monocyte differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048863 IEA stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056030 hoxb7a homeo box B7a protein_coding Danio_rerio
ENSMUSG00000038236 Hoxa7 homeobox A7 protein_coding Mus_musculus

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