C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038236 Hoxa7 10090 - 6:52214491-52221854 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048715 Hoxa7-201 52215623-52218573 protein_coding
  ENSMUST00000134367 Hoxa7-004 52215753-52218711 protein_coding
  ENSMUST00000140316 Hoxa7-003 52216440-52217452 protein_coding
  ENSMUST00000150041 Hoxa7-001 52216009-52221854 protein_coding
  ENSMUST00000153280 Hoxa7-002 52214491-52220393 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000048715ENSMUST00000134367ENSMUST00000140316ENSMUST00000153280
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000048715 N/A N/A N/A N/A 14.040±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000134367 N/A 6.888±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140316 N/A 9.920±1.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153280 6.534±3.58 6.185±1.47 8.455±3.30 5.705±2.31 18.521±4.75 14.985±6.80 0.375±0.09 3.945±0.44 1.747±0.20 4.735±1.37 0.526±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P9 CIL_0003P9_0002 CGP 6:52206288-52221854
CIL_0003PA CIL_0003PA_0002 CGP 6:52214491-52231089

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001525 IEA angiogenesis
GO:0001953 IEA negative regulation of cell-matrix adhesion
GO:0002686 IEA negative regulation of leukocyte migration
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0045617 IEA negative regulation of keratinocyte differentiation
GO:0045656 IEA negative regulation of monocyte differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048863 IDA stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056030 hoxb7a homeo box B7a protein_coding Danio_rerio
ENSG00000122592 HOXA7 homeobox A7 protein_coding Homo_sapiens

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