C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000242159 HOXA7-001 ENSG00000122592 9606 - 7:27153716-27156677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000242159
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000242159 5.756±0.00 8.498±0.00 3.208±0.00 5.939±4.67 6.102±0.00 12.808±0.00 4.127±0.00 6.195±0.00 1.608±0.69 0.529±0.22 6.373±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003P9 CIL_0003P9_0001 CGP 7:27145396-27157936
CIL_0003PA CIL_0003PA_0001 CGP 7:27153716-27175180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001525 IEP angiogenesis
GO:0001953 IDA negative regulation of cell-matrix adhesion
GO:0002686 IDA negative regulation of leukocyte migration
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IDA sequence-specific DNA binding
GO:0045617 IDA negative regulation of keratinocyte differentiation
GO:0045656 IDA negative regulation of monocyte differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048863 IEA stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048715 Hoxa7-201 protein_coding Mus_musculus 0 1171
ENSMUST00000153280 Hoxa7-002 nonsense_mediated_decay Mus_musculus 0 767
ENSMUST00000134367 Hoxa7-004 protein_coding Mus_musculus 0 675
ENSMUST00000140316 Hoxa7-003 protein_coding Mus_musculus 0 647
ENSMUST00000150041 Hoxa7-001 protein_coding Mus_musculus 0 409
ENSMUST00000049352 Hoxb7-001 protein_coding Mus_musculus 0 228
ENSMUST00000062829 Hoxa6-001 protein_coding Mus_musculus 0 228
ENSMUST00000001711 Hoxc6-001 protein_coding Mus_musculus 0 193
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 2e-33 148
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 5e-29 134
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 5e-29 134
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 5e-29 134
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 5e-29 134
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 5e-29 134
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 5e-29 134
ENSMUST00000151596 Hoxb7-002 processed_transcript Mus_musculus 1e-25 122
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 5e-24 117
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 5e-24 117
ENSDART00000080466 hoxa3a-009 protein_coding Danio_rerio 4e-20 104
ENSMUST00000100523 Hoxb2-001 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000182030 Hoxb2-002 retained_intron Mus_musculus 0.0000000001 73
ENSMUST00000142611 Hoxa10-003 processed_transcript Mus_musculus 0.0000002 62
ENSMUST00000121043 Hoxa10-004 protein_coding Mus_musculus 0.0000002 62
ENSMUST00000126402 Hoxa10-002 processed_transcript Mus_musculus 0.0000002 62
ENSMUST00000125581 Hoxa10-001 protein_coding Mus_musculus 0.0000002 62

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