C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: exosome component 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123737 EXOSC9 9606 + 4:121801317-121817021 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243498 EXOSC9-001 121801317-121816909 protein_coding
  ENST00000379663 EXOSC9-003 121801320-121816909 protein_coding
  ENST00000503139 EXOSC9-006 121804734-121814627 processed_transcript
  ENST00000503236 EXOSC9-012 121809986-121816840 processed_transcript
  ENST00000506201 EXOSC9-010 121804499-121807868 retained_intron
  ENST00000508212 EXOSC9-009 121802738-121813293 processed_transcript
  ENST00000509800 EXOSC9-008 121801346-121811660 protein_coding
  ENST00000509980 EXOSC9-002 121801318-121815403 processed_transcript
  ENST00000511132 EXOSC9-011 121804732-121814047 protein_coding
  ENST00000511454 EXOSC9-007 121801325-121811641 nonsense_mediated_decay
  ENST00000512454 EXOSC9-005 121801593-121816911 protein_coding
  ENST00000513654 EXOSC9-004 121801323-121817021 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243498ENST00000379663ENST00000503236ENST00000509800ENST00000509980ENST00000511132ENST00000513654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243498 2.582±0.00 3.317±0.00 N/A 4.416±0.48 2.233±0.58 2.298±0.17 2.975±1.80 2.409±0.00 2.106±0.00 1.981±0.09 1.540±0.00 11.153±6.80 11.065±7.87 49.503±24.27
ENST00000379663 1.552±0.00 N/A N/A N/A N/A 1.855±0.00 2.125±0.00 1.442±0.00 3.204±0.00 1.316±0.00 2.522±1.85 N/A 1.782±0.00 N/A
ENST00000503236 N/A N/A 1.673±0.00 3.485±0.00 2.644±0.00 N/A 1.062±0.00 N/A N/A 2.327±0.00 N/A N/A N/A N/A
ENST00000509800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.114±0.00 N/A N/A N/A
ENST00000509980 3.038±0.00 6.501±0.00 0.803±0.00 4.341±0.00 2.365±0.00 N/A N/A 1.319±0.24 1.709±0.00 N/A N/A 2.342±0.00 N/A 29.712±8.89
ENST00000511132 4.432±0.00 N/A N/A N/A 4.530±0.00 N/A N/A N/A N/A N/A 2.225±1.10 N/A N/A N/A
ENST00000513654 N/A N/A N/A 0.598±0.24 0.392±0.00 0.631±0.00 0.101±0.00 N/A 0.439±0.00 0.386±0.02 N/A 1.069±0.57 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KG CIL_0000KG_0001 CGP 4:121801317-121823933

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000175 NAS 3'-5'-exoribonuclease activity
GO:0000176 NAS nuclear exosome (RNase complex)
GO:0000178 IDA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000956 IMP nuclear-transcribed mRNA catabolic process
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006364 NAS rRNA processing
GO:0006955 NAS immune response
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017091 IDA AU-rich element binding
GO:0030307 IMP positive regulation of cell growth
GO:0043928 IMP exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0071028 IMP nuclear mRNA surveillance
GO:0071035 IMP nuclear polyadenylation-dependent rRNA catabolic process
GO:0090503 NAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006392 exosc9 exosome component 9 protein_coding Danio_rerio
ENSMUSG00000027714 Exosc9 exosome component 9 protein_coding Mus_musculus

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