C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: exosome component 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027714 Exosc9 10090 + 3:36552606-36565729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029269 Exosc9-001 36552606-36565729 protein_coding
  ENSMUST00000131316 Exosc9-008 36562096-36565645 protein_coding
  ENSMUST00000133854 Exosc9-005 36552651-36561405 retained_intron
  ENSMUST00000136890 Exosc9-006 36552638-36556951 protein_coding
  ENSMUST00000138636 Exosc9-009 36552614-36556777 retained_intron
  ENSMUST00000149041 Exosc9-007 36552627-36556997 retained_intron
  ENSMUST00000155866 Exosc9-002 36552606-36563271 nonsense_mediated_decay
  ENSMUST00000156100 Exosc9-010 36555553-36563246 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029269ENSMUST00000131316ENSMUST00000136890ENSMUST00000149041ENSMUST00000155866
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029269 1.576±0.65 N/A 8.347±2.51 12.451±3.39 N/A 1.479±0.46 1.188±0.41 0.964±0.32 2.698±0.00 6.741±0.41 12.447±0.56 12.442±5.08 6.775±2.81
ENSMUST00000131316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.624±0.00
ENSMUST00000136890 2.404±0.00 N/A N/A N/A 6.691±2.27 N/A 2.197±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000149041 5.892±3.18 5.997±0.88 N/A N/A 4.915±0.80 2.738±0.75 4.014±1.18 3.097±1.23 5.867±1.15 N/A N/A N/A 7.244±0.75
ENSMUST00000155866 1.065±0.00 N/A N/A 9.019±0.00 N/A 1.255±0.15 1.434±0.05 1.349±0.21 N/A N/A 8.926±0.00 9.689±1.85 3.572±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KG CIL_0000KG_0002 CGP 3:36552606-36572150

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000178 ISS exosome (RNase complex)
GO:0000956 IEA nuclear-transcribed mRNA catabolic process
GO:0004527 IEA exonuclease activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 TAS nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0017091 IEA AU-rich element binding
GO:0030307 IEA positive regulation of cell growth
GO:0043928 IEA exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IEA poly(A) RNA binding
GO:0045111 IEA intermediate filament cytoskeleton
GO:0071028 IEA nuclear mRNA surveillance
GO:0071035 IEA nuclear polyadenylation-dependent rRNA catabolic process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006392 exosc9 exosome component 9 protein_coding Danio_rerio
ENSG00000123737 EXOSC9 exosome component 9 protein_coding Homo_sapiens

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