C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379663 EXOSC9-003 ENSG00000123737 9606 + 4:121801320-121816909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartKidneyLiverLungMusclePlacentaENST00000379663
Transcript ID Adipose Colon Heart Kidney Liver Lung Muscle Placenta
ENST00000379663 1.552±0.00 1.855±0.00 2.125±0.00 1.442±0.00 3.204±0.00 1.316±0.00 2.522±1.85 1.782±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KG CIL_0000KG_0001 CGP 4:121801317-121823933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000175 NAS 3'-5'-exoribonuclease activity
GO:0000176 NAS nuclear exosome (RNase complex)
GO:0000178 IDA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000956 IMP nuclear-transcribed mRNA catabolic process
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006364 NAS rRNA processing
GO:0006955 NAS immune response
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017091 IDA AU-rich element binding
GO:0030307 IMP positive regulation of cell growth
GO:0043928 IMP exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0071028 IMP nuclear mRNA surveillance
GO:0071035 IMP nuclear polyadenylation-dependent rRNA catabolic process
GO:0090503 NAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029269 Exosc9-001 protein_coding Mus_musculus 0 1430
ENSMUST00000155866 Exosc9-002 nonsense_mediated_decay Mus_musculus 0 1295
ENSMUST00000133854 Exosc9-005 retained_intron Mus_musculus 0 911
ENSMUST00000136890 Exosc9-006 protein_coding Mus_musculus 0 736
ENSMUST00000149041 Exosc9-007 retained_intron Mus_musculus 0 630
ENSMUST00000156100 Exosc9-010 processed_transcript Mus_musculus 0 464
ENSMUST00000138636 Exosc9-009 retained_intron Mus_musculus 0 459

Loading