C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Z-DNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124256 ZBP1 9606 - 20:57603846-57620576 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371173 ZBP1-001 57603846-57620473 protein_coding
  ENST00000395822 ZBP1-003 57603846-57620576 protein_coding
  ENST00000432548 ZBP1-006 57615124-57620490 processed_transcript
  ENST00000453793 ZBP1-005 57607061-57610265 protein_coding
  ENST00000461547 ZBP1-004 57604055-57618081 retained_intron
  ENST00000480037 ZBP1-002 57612891-57620427 retained_intron
  ENST00000538947 ZBP1-009 57615026-57620478 processed_transcript
  ENST00000541799 ZBP1-008 57612891-57620394 protein_coding
  ENST00000546110 ZBP1-007 57614904-57620480 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000371173ENST00000395822ENST00000432548ENST00000453793ENST00000461547ENST00000480037ENST00000538947ENST00000541799ENST00000546110
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000371173 N/A 0.529±0.00 N/A N/A N/A N/A N/A N/A 0.536±0.29 0.203±0.11 0.154±0.02 N/A
ENST00000395822 0.039±0.00 N/A 0.042±0.01 0.810±0.00 0.235±0.11 0.045±0.00 N/A 0.132±0.00 N/A N/A 0.179±0.02 0.125±0.00
ENST00000432548 N/A N/A N/A N/A N/A N/A 0.354±0.00 N/A N/A N/A N/A N/A
ENST00000453793 N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 N/A N/A N/A 0.396±0.00
ENST00000461547 N/A N/A N/A N/A 0.159±0.00 0.006±0.00 N/A N/A N/A 0.030±0.00 0.035±0.00 N/A
ENST00000480037 N/A N/A N/A 0.175±0.00 0.520±0.00 N/A N/A N/A N/A 0.491±0.43 0.070±0.00 N/A
ENST00000538947 N/A N/A N/A 1.332±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541799 N/A 1.348±0.00 N/A 1.296±0.00 0.487±0.00 N/A N/A 0.142±0.00 0.762±0.05 0.364±0.27 N/A 0.079±0.00
ENST00000546110 N/A N/A N/A N/A N/A N/A N/A 0.360±0.00 0.953±0.32 N/A 0.446±0.00 0.068±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_0005K4 CIL_0005K4_0001 CGP 20:57561080-57620576
CIL_0005K6 CIL_0005K6_0001 CGP 20:57603846-57711536

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003692 NAS left-handed Z-DNA binding
GO:0003723 IEA RNA binding
GO:0003726 IEA double-stranded RNA adenosine deaminase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0032481 TAS positive regulation of type I interferon production
GO:0045087 TAS innate immune response
GO:0060340 IEA positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000027514 Zbp1 Z-DNA binding protein 1 protein_coding Mus_musculus

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