C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Z-DNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027514 Zbp1 10090 - 2:173206612-173218923 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029018 Zbp1-001 173206612-173218923 protein_coding
  ENSMUST00000109116 Zbp1-002 173213735-173218910 protein_coding
  ENSMUST00000146802 Zbp1-003 173206615-173218897 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029018ENSMUST00000109116ENSMUST00000146802
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029018 1.314±0.34 1.510±0.64 0.633±0.08 0.059±0.04 5.631±1.31 4.333±0.65 0.157±0.01 0.912±0.44 1.631±1.16 1.136±0.19 0.087±0.08 1.107±0.40 0.403±0.16 0.139±0.00
ENSMUST00000109116 2.897±0.31 0.974±0.08 3.024±0.06 0.044±0.00 N/A 5.384±1.86 0.595±0.00 1.091±0.33 2.566±1.72 1.434±0.23 0.152±0.03 2.256±0.84 0.777±0.44 N/A
ENSMUST00000146802 1.344±0.38 0.779±0.37 0.644±0.07 0.018±0.01 3.532±0.83 1.956±0.84 0.132±0.06 0.560±0.31 0.702±0.61 0.799±0.00 0.044±0.03 1.029±0.80 0.100±0.05 0.068±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_0005K4 CIL_0005K4_0002 CGP 2:173153048-173218923
CIL_0005K6 CIL_0005K6_0002 CGP 2:173206612-173276533

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003692 IDA left-handed Z-DNA binding
GO:0003723 IEA RNA binding
GO:0003726 IEA double-stranded RNA adenosine deaminase activity
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005737 ISO cytoplasm
GO:0005829 IEA cytosol
GO:0008152 IEA metabolic process
GO:0016032 IEA viral process
GO:0045087 IEA innate immune response
GO:0051607 IEA defense response to virus
GO:0060340 IMP positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000124256 ZBP1 Z-DNA binding protein 1 protein_coding Homo_sapiens

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