C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124380 SNRNP27 9606 + 2:69893560-69905575 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000244227 SNRNP27-001 69893560-69905217 protein_coding
  ENST00000409116 SNRNP27-002 69893959-69905218 protein_coding
  ENST00000450162 SNRNP27-003 69893964-69904671 nonsense_mediated_decay
  ENST00000487029 SNRNP27-005 69904254-69905575 nonsense_mediated_decay
  ENST00000488986 SNRNP27-004 69896520-69903407 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244227ENST00000409116ENST00000450162
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.085±0.00 N/A N/A
ENST00000409116 10.022±0.00 7.757±0.00 N/A 9.456±0.88 8.006±0.00 8.454±0.00 5.214±3.29 5.985±2.60 3.913±0.00 9.533±0.00 11.440±0.00 8.822±0.00 6.477±2.45 7.253±0.00
ENST00000450162 N/A 6.471±0.00 35.936±0.00 24.083±14.67 13.038±6.26 13.820±4.56 5.878±1.63 11.325±5.10 10.849±7.92 24.401±0.00 24.042±13.10 11.150±3.01 11.108±1.98 11.305±1.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 NAS nucleic acid binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035625 snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) protein_coding Danio_rerio
ENSMUSG00000001158 Snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) protein_coding Mus_musculus

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