C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450162 SNRNP27-003 ENSG00000124380 9606 + 2:69893964-69904671 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450162
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450162 6.471±0.00 35.936±0.00 24.083±14.67 13.038±6.26 13.820±4.56 5.878±1.63 11.325±5.10 10.849±7.92 24.401±0.00 24.042±13.10 11.150±3.01 11.108±1.98 11.305±1.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 NAS nucleic acid binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001186 Snrnp27-001 protein_coding Mus_musculus 0 684
ENSMUST00000131674 Snrnp27-003 processed_transcript Mus_musculus 0 647
ENSMUST00000113683 Snrnp27-002 protein_coding Mus_musculus 0 558
ENSDART00000051655 snrnp27-001 protein_coding Danio_rerio 6e-29 132

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