C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 27 (U4/U6.U5)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001158 Snrnp27 10090 - 6:86675221-86684522 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001186 Snrnp27-001 86675221-86684522 protein_coding
  ENSMUST00000113683 Snrnp27-002 86675672-86684522 protein_coding
  ENSMUST00000131674 Snrnp27-003 86675405-86684491 processed_transcript
  ENSMUST00000133404 Snrnp27-004 86682676-86684517 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001186ENSMUST00000113683ENSMUST00000131674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001186 6.825±0.86 6.396±2.20 26.282±0.01 23.313±4.26 6.153±1.19 8.826±1.55 7.916±1.49 12.170±1.68 15.053±10.13 8.990±0.79 32.715±3.14 12.657±12.68 27.214±7.77 18.074±3.45
ENSMUST00000113683 N/A N/A N/A N/A 0.926±0.15 1.529±0.00 N/A N/A N/A N/A N/A 0.826±0.05 N/A N/A
ENSMUST00000131674 1.365±0.41 1.948±0.37 N/A 45.348±0.00 1.669±0.55 2.000±0.70 1.352±0.22 1.950±0.47 2.201±0.51 1.035±0.00 N/A 9.839±25.31 73.188±59.16 69.554±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169
CIL_0005JQ CIL_0005JQ_0002 CGP 6:86647044-86684522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035625 snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) protein_coding Danio_rerio
ENSG00000124380 SNRNP27 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) protein_coding Homo_sapiens

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