C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat (in FLII) interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124831 LRRFIP1 9606 + 2:237627576-237813682 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000244815 LRRFIP1-001 237692216-237765915 protein_coding
  ENST00000289175 LRRFIP1-004 237692145-237765279 protein_coding
  ENST00000308482 LRRFIP1-002 237627576-237780315 protein_coding
  ENST00000392000 LRRFIP1-003 237692339-237764961 protein_coding
  ENST00000420665 LRRFIP1-005 237692333-237749300 protein_coding
  ENST00000464608 LRRFIP1-015 237771944-237779561 retained_intron
  ENST00000465870 LRRFIP1-011 237627607-237722131 retained_intron
  ENST00000468950 LRRFIP1-009 237769626-237774227 processed_transcript
  ENST00000473815 LRRFIP1-007 237692494-237735676 processed_transcript
  ENST00000474195 LRRFIP1-010 237771982-237780309 retained_intron
  ENST00000478958 LRRFIP1-008 237768197-237780315 retained_intron
  ENST00000483443 LRRFIP1-014 237756095-237770776 retained_intron
  ENST00000489295 LRRFIP1-013 237683404-237684473 processed_transcript
  ENST00000489603 LRRFIP1-016 237769732-237813682 processed_transcript
  ENST00000498053 LRRFIP1-012 237683404-237756175 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244815ENST00000289175ENST00000308482ENST00000392000ENST00000478958
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244815 N/A N/A 1.339±0.00 1.961±0.00 4.192±0.00 N/A 3.019±0.00 5.831±3.16 6.536±0.00 15.237±0.00 N/A 6.364±0.00 3.300±0.00 N/A
ENST00000289175 6.713±0.00 9.716±0.00 3.063±0.00 2.797±0.00 3.436±0.00 6.028±1.28 3.445±0.00 4.105±1.97 3.605±1.07 7.863±0.00 N/A 13.729±13.94 16.486±14.11 5.180±0.00
ENST00000308482 17.711±0.00 16.830±0.00 N/A 5.911±4.01 N/A N/A 16.935±9.23 N/A N/A N/A 13.256±10.64 7.045±0.37 N/A 11.344±0.00
ENST00000392000 N/A N/A 1.255±0.00 N/A 2.134±0.00 N/A N/A N/A 2.600±0.00 N/A N/A N/A N/A N/A
ENST00000478958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.087±7.38 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_0002H4 CIL_0002H4_0001 CGP 2:237574322-237813682
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003XV CIL_0003XV_0001 CGP 2:237627576-237842808

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003725 TAS double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 NAS nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0032481 TAS positive regulation of type I interferon production
GO:0042803 IDA protein homodimerization activity
GO:0045087 TAS innate immune response
GO:0045892 NAS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030012 lrrfip1a leucine rich repeat (in FLII) interacting protein 1a protein_coding Danio_rerio
ENSDARG00000095170 lrrfip1b leucine rich repeat (in FLII) interacting protein 1b protein_coding Danio_rerio
ENSMUSG00000026305 Lrrfip1 leucine rich repeat (in FLII) interacting protein 1 protein_coding Mus_musculus

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