C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat (in FLII) interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308482 LRRFIP1-002 ENSG00000124831 9606 + 2:237627576-237780315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartMuscleOvaryTestisENST00000308482
Transcript ID Adipose Adrenal Brain Heart Muscle Ovary Testis
ENST00000308482 17.711±0.00 16.830±0.00 5.911±4.01 16.935±9.23 13.256±10.64 7.045±0.37 11.344±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_0002H4 CIL_0002H4_0001 CGP 2:237574322-237813682
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003XV CIL_0003XV_0001 CGP 2:237627576-237842808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003725 TAS double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 NAS nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0032481 TAS positive regulation of type I interferon production
GO:0042803 IDA protein homodimerization activity
GO:0045087 TAS innate immune response
GO:0045892 NAS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068167 Lrrfip1-201 protein_coding Mus_musculus 0 1940
ENSMUST00000097650 Lrrfip1-005 protein_coding Mus_musculus 0 1940
ENSMUST00000189617 Lrrfip1-006 protein_coding Mus_musculus 0 1607
ENSMUST00000185531 Lrrfip1-004 protein_coding Mus_musculus 0 1206
ENSMUST00000068116 Lrrfip1-001 protein_coding Mus_musculus 0 1033
ENSMUST00000189505 Lrrfip1-002 protein_coding Mus_musculus 0 477
ENSMUST00000187532 Lrrfip1-011 retained_intron Mus_musculus 0 231
ENSMUST00000097649 Lrrfip1-003 protein_coding Mus_musculus 3e-37 161
ENSMUST00000188708 Lrrfip1-008 processed_transcript Mus_musculus 4e-36 158
ENSMUST00000188094 Lrrfip1-007 processed_transcript Mus_musculus 4e-36 158

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