C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat (in FLII) interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026305 Lrrfip1 10090 + 1:90998737-91128944 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068116 Lrrfip1-001 90998779-91128940 protein_coding
  ENSMUST00000068167 Lrrfip1-201 91053444-91128944 protein_coding
  ENSMUST00000097649 Lrrfip1-003 91053454-91117315 protein_coding
  ENSMUST00000097650 Lrrfip1-005 91053507-91128918 protein_coding
  ENSMUST00000185531 Lrrfip1-004 90998777-91122539 protein_coding
  ENSMUST00000186762 Lrrfip1-009 91053507-91100581 protein_coding
  ENSMUST00000187375 Lrrfip1-010 91119960-91122525 processed_transcript
  ENSMUST00000187532 Lrrfip1-011 91125356-91128178 retained_intron
  ENSMUST00000188094 Lrrfip1-007 91111214-91116921 processed_transcript
  ENSMUST00000188708 Lrrfip1-008 91111233-91114852 processed_transcript
  ENSMUST00000189505 Lrrfip1-002 90998737-91108640 protein_coding
  ENSMUST00000189617 Lrrfip1-006 91053586-91128287 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068116ENSMUST00000068167ENSMUST00000097649ENSMUST00000097650ENSMUST00000185531ENSMUST00000187532ENSMUST00000188094ENSMUST00000189505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068116 2.484±0.28 N/A 27.345±0.22 6.622±0.99 N/A 5.563±0.00 4.103±0.75 2.189±0.51 1.368±0.68 8.272±1.36 14.648±2.09 5.076±2.87 7.306±2.83 0.205±0.10
ENSMUST00000068167 N/A N/A N/A N/A N/A 3.091±0.00 N/A N/A N/A N/A 6.461±0.00 N/A N/A 0.101±0.00
ENSMUST00000097649 2.030±0.16 1.020±0.18 36.135±0.82 N/A 3.279±1.09 7.620±1.09 N/A 3.670±0.41 5.408±3.46 13.101±0.63 N/A 6.433±2.95 11.154±5.17 0.196±0.08
ENSMUST00000097650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.128±2.07 N/A N/A N/A
ENSMUST00000185531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.133±2.84 N/A N/A N/A
ENSMUST00000187532 N/A N/A N/A 39.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188094 N/A N/A N/A N/A N/A N/A 3.388±0.00 N/A N/A N/A N/A 7.105±5.06 N/A 0.240±0.21
ENSMUST00000189505 4.172±0.00 3.739±0.65 N/A 5.020±0.00 N/A N/A N/A N/A N/A N/A N/A 6.479±1.82 N/A 0.286±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0002H4 CIL_0002H4_0002 CGP 1:90958133-91128944
CIL_0003XV CIL_0003XV_0002 CGP 1:90998737-91170795

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0042803 IEA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030012 lrrfip1a leucine rich repeat (in FLII) interacting protein 1a protein_coding Danio_rerio
ENSDARG00000095170 lrrfip1b leucine rich repeat (in FLII) interacting protein 1b protein_coding Danio_rerio
ENSG00000124831 LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 protein_coding Homo_sapiens

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